Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC128688.1-201ENST00000487626 519 ntBASIC24.38■■□□□ 1.49
CACNA1FO60840 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1FO60840 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1FO60840 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC24.38■■□□□ 1.49
CACNA1FO60840 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1FO60840 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1FO60840 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC24.38■■□□□ 1.49
CACNA1FO60840 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1FO60840 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC24.38■■□□□ 1.49
CACNA1FO60840 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
CACNA1FO60840 CRYGFP-201ENST00000418459 633 ntBASIC24.38■■□□□ 1.49
CACNA1FO60840 TSPY17P-201ENST00000450329 467 ntBASIC24.38■■□□□ 1.49
CACNA1FO60840 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC24.38■■□□□ 1.49
CACNA1FO60840 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
CACNA1FO60840 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
CACNA1FO60840 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
CACNA1FO60840 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC24.37■■□□□ 1.49
CACNA1FO60840 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC24.37■■□□□ 1.49
CACNA1FO60840 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CACNA1FO60840 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC24.37■■□□□ 1.49
CACNA1FO60840 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1FO60840 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
CACNA1FO60840 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC24.36■■□□□ 1.49
CACNA1FO60840 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC24.36■■□□□ 1.49
CACNA1FO60840 TBC1D3P2-202ENST00000577902 1649 ntBASIC24.36■■□□□ 1.49
CACNA1FO60840 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC24.36■■□□□ 1.49
CACNA1FO60840 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1FO60840 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1FO60840 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
CACNA1FO60840 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.36■■□□□ 1.49
CACNA1FO60840 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.36■■□□□ 1.49
CACNA1FO60840 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
CACNA1FO60840 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC24.36■■□□□ 1.49
CACNA1FO60840 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
CACNA1FO60840 SLC25A3P1-201ENST00000443844 931 ntBASIC24.36■■□□□ 1.49
CACNA1FO60840 AC008040.2-201ENST00000461049 708 ntBASIC24.36■■□□□ 1.49
CACNA1FO60840 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
CACNA1FO60840 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
CACNA1FO60840 AC133561.5-201ENST00000635547 218 ntBASIC24.36■■□□□ 1.49
CACNA1FO60840 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
CACNA1FO60840 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1FO60840 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC24.35■■□□□ 1.49
CACNA1FO60840 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
CACNA1FO60840 TSPY14P-201ENST00000303979 915 ntBASIC24.35■■□□□ 1.49
CACNA1FO60840 ECEL1P3-201ENST00000427961 737 ntBASIC24.35■■□□□ 1.49
CACNA1FO60840 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC24.35■■□□□ 1.49
CACNA1FO60840 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.35■■□□□ 1.49
CACNA1FO60840 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1FO60840 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC24.35■■□□□ 1.49
CACNA1FO60840 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
CACNA1FO60840 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CACNA1FO60840 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC24.34■■□□□ 1.49
CACNA1FO60840 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC24.34■■□□□ 1.49
CACNA1FO60840 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC24.34■■□□□ 1.49
CACNA1FO60840 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
CACNA1FO60840 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
CACNA1FO60840 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.34■■□□□ 1.49
CACNA1FO60840 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CACNA1FO60840 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC24.34■■□□□ 1.49
CACNA1FO60840 RN7SL850P-201ENST00000579959 291 ntBASIC24.34■■□□□ 1.49
CACNA1FO60840 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CACNA1FO60840 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC24.34■■□□□ 1.49
CACNA1FO60840 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CACNA1FO60840 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CACNA1FO60840 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CACNA1FO60840 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC24.33■■□□□ 1.49
CACNA1FO60840 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24.33■■□□□ 1.49
CACNA1FO60840 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC24.33■■□□□ 1.49
CACNA1FO60840 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.33■■□□□ 1.49
CACNA1FO60840 AC010653.2-201ENST00000623505 997 ntBASIC24.33■■□□□ 1.49
CACNA1FO60840 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC24.33■■□□□ 1.49
CACNA1FO60840 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CACNA1FO60840 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CACNA1FO60840 AC141586.3-201ENST00000562166 1838 ntBASIC24.33■■□□□ 1.49
CACNA1FO60840 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CACNA1FO60840 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CACNA1FO60840 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CACNA1FO60840 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.33■■□□□ 1.48
CACNA1FO60840 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms