Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
HMGN4O00479 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGN4O00479 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
HMGN4O00479 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGN4O00479 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGN4O00479 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.96■□□□□ 0.47
HMGN4O00479 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.96■□□□□ 0.47
HMGN4O00479 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGN4O00479 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGN4O00479 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGN4O00479 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.96■□□□□ 0.47
HMGN4O00479 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.96■□□□□ 0.47
HMGN4O00479 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGN4O00479 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGN4O00479 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGN4O00479 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
HMGN4O00479 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGN4O00479 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HMGN4O00479 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGN4O00479 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGN4O00479 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGN4O00479 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.46
HMGN4O00479 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
HMGN4O00479 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HMGN4O00479 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HMGN4O00479 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
HMGN4O00479 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGN4O00479 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGN4O00479 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HMGN4O00479 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGN4O00479 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
HMGN4O00479 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGN4O00479 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGN4O00479 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HMGN4O00479 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGN4O00479 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGN4O00479 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGN4O00479 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGN4O00479 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.94■□□□□ 0.46
HMGN4O00479 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGN4O00479 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGN4O00479 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGN4O00479 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HMGN4O00479 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HMGN4O00479 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HMGN4O00479 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGN4O00479 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGN4O00479 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 FP475955.4-201ENST00000623131 1990 ntBASIC17.93■□□□□ 0.46
HMGN4O00479 IRX1P1-201ENST00000438849 1838 ntBASIC17.93■□□□□ 0.46
HMGN4O00479 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
HMGN4O00479 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HMGN4O00479 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
HMGN4O00479 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms