Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 ATP1B3P1-201ENST00000605365 821 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 OR51C1P-201ENST00000608504 942 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 DMD-211ENST00000378707 7410 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 RNU1-18P-201ENST00000363062 164 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 OR13C3-201ENST00000374781 1108 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AL391417.1-201ENST00000404100 426 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AL139281.1-201ENST00000422120 335 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC140076.1-201ENST00000449897 361 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 RNU4-29P-201ENST00000515943 174 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC107398.3-201ENST00000562284 7000 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 AC005332.5-201ENST00000591222 2919 ntBASIC3.29□□□□□ -1.88
VPS13AQ96RL7 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS13AQ96RL7 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 ATP5F1P5-201ENST00000526403 760 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 DDX6P1-205ENST00000441966 1436 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AC010168.2-201ENST00000562691 5428 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AC099563.1-201ENST00000456086 418 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AC128713.1-201ENST00000471495 306 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 TRBV12-1-201ENST00000479785 344 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 PPBPP1-201ENST00000510807 373 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 CYCSP39-201ENST00000565821 309 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AP002512.4-202ENST00000641599 4530 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AC004448.2-201ENST00000422360 586 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AL356535.1-201ENST00000440335 398 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 RNA5SP356-201ENST00000515972 94 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS13AQ96RL7 AL591424.2-201ENST00000617023 128 ntBASIC3.28□□□□□ -1.88
VPS13AQ96RL7 GVINP1-202ENST00000531871 7271 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 RPS21P8-201ENST00000413365 247 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AL691447.1-201ENST00000419456 387 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AC108022.1-201ENST00000493466 478 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 OR5AC4P-202ENST00000642086 985 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 CR383658.2-201ENST00000547576 1525 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 RPL6P21-201ENST00000418672 846 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 H3F3AP1-201ENST00000559984 334 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AC234778.2-201ENST00000566241 354 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AC064859.1-201ENST00000624741 174 ntBASIC3.27□□□□□ -1.89
VPS13AQ96RL7 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
VPS13AQ96RL7 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
VPS13AQ96RL7 TPTE2P3-201ENST00000441562 1189 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms