Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 VN1R90P-201ENST00000595717 726 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 AC046143.2-201ENST00000609789 160 ntBASIC3.55□□□□□ -1.84
COL6A3P12111 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
COL6A3P12111 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL6A3P12111 HSPD1P14-201ENST00000432666 1618 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL6A3P12111 SETP9-201ENST00000423837 832 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC3.54□□□□□ -1.84
COL6A3P12111 IGKV3-31-201ENST00000523109 329 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A3P12111 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL6A3P12111 AL359643.1-201ENST00000404109 423 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 MTHFD2P2-201ENST00000407725 247 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 AC019097.1-201ENST00000424783 735 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.54□□□□□ -1.84
COL6A3P12111 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.54□□□□□ -1.84
COL6A3P12111 TPT1P1-201ENST00000458495 518 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.54□□□□□ -1.84
COL6A3P12111 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.54□□□□□ -1.84
COL6A3P12111 AC044913.1-201ENST00000557200 430 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A3P12111 AC234778.2-201ENST00000566241 354 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.54□□□□□ -1.84
COL6A3P12111 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC3.54□□□□□ -1.84
COL6A3P12111 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A3P12111 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC3.54□□□□□ -1.84
COL6A3P12111 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A3P12111 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC3.54□□□□□ -1.84
COL6A3P12111 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.54□□□□□ -1.84
COL6A3P12111 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL6A3P12111 AC093156.1-201ENST00000440382 670 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A3P12111 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A3P12111 SETP12-201ENST00000514068 805 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A3P12111 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC3.53□□□□□ -1.84
COL6A3P12111 AL672296.1-201ENST00000427780 2158 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.53□□□□□ -1.84
COL6A3P12111 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 AC006504.1-201ENST00000562493 3666 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 TNPO1P3-201ENST00000436471 2662 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.53□□□□□ -1.84
COL6A3P12111 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 Y_RNA.796-201ENST00000364268 102 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 Y_RNA.799-201ENST00000364992 102 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.53□□□□□ -1.84
COL6A3P12111 AL353678.1-201ENST00000422735 741 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A3P12111 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC3.53□□□□□ -1.84
COL6A3P12111 AC008549.1-201ENST00000512900 643 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 AP002812.4-201ENST00000532139 286 ntBASIC3.53□□□□□ -1.84
COL6A3P12111 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.53□□□□□ -1.84
COL6A3P12111 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COL6A3P12111 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.53□□□□□ -1.84
COL6A3P12111 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.53□□□□□ -1.84
COL6A3P12111 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A3P12111 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
COL6A3P12111 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
COL6A3P12111 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
COL6A3P12111 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.53□□□□□ -1.85
COL6A3P12111 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.53□□□□□ -1.85
COL6A3P12111 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.53□□□□□ -1.85
COL6A3P12111 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.53□□□□□ -1.85
COL6A3P12111 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC3.52□□□□□ -1.85
COL6A3P12111 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.52□□□□□ -1.85
COL6A3P12111 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
COL6A3P12111 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A3P12111 RNU6-482P-201ENST00000391068 107 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 EIF4A1P1-201ENST00000420241 934 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A3P12111 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.52□□□□□ -1.85
COL6A3P12111 AC078785.3-201ENST00000476607 425 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 OR4A12P-201ENST00000530847 918 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A3P12111 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A3P12111 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A3P12111 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.52□□□□□ -1.85
COL6A3P12111 AC124856.1-201ENST00000600819 896 ntBASIC3.52□□□□□ -1.85
COL6A3P12111 AL162713.1-201ENST00000604480 262 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms