Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 AC091390.4-202ENST00000476426 537 ntBASIC20.26■□□□□ 0.83
USP3Q9Y6I4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 AP000692.2-201ENST00000608391 879 ntBASIC20.26■□□□□ 0.83
USP3Q9Y6I4 AC073912.3-201ENST00000624414 853 ntBASIC20.26■□□□□ 0.83
USP3Q9Y6I4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
USP3Q9Y6I4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 AC011298.2-201ENST00000617989 482 ntBASIC20.25■□□□□ 0.83
USP3Q9Y6I4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP3Q9Y6I4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 AP000525.1-201ENST00000608286 694 ntBASIC20.24■□□□□ 0.83
USP3Q9Y6I4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.24■□□□□ 0.83
USP3Q9Y6I4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 AC116562.4-201ENST00000641316 2276 ntBASIC20.23■□□□□ 0.83
USP3Q9Y6I4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 FITM1-202ENST00000559294 800 ntBASIC20.23■□□□□ 0.83
USP3Q9Y6I4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.23■□□□□ 0.83
USP3Q9Y6I4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 AC093484.2-201ENST00000580996 2166 ntBASIC20.22■□□□□ 0.83
USP3Q9Y6I4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP3Q9Y6I4 Z82202.1-201ENST00000623446 1880 ntBASIC20.22■□□□□ 0.83
USP3Q9Y6I4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 SDHAP1-207ENST00000440850 2000 ntBASIC20.21■□□□□ 0.83
USP3Q9Y6I4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms