Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SMUG1P1-201ENST00000590640 811 ntBASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VCX3AQ9NNX9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 PCDHA12-202ENST00000613593 2588 ntBASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VCX3AQ9NNX9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 AC009237.14-201ENST00000609975 1594 ntBASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VCX3AQ9NNX9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 AL391005.1-201ENST00000623953 2435 ntBASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VCX3AQ9NNX9 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms