Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LIME1Q9H400 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 AL121894.2-201ENST00000602977 491 ntBASIC16.98■□□□□ 0.31
LIME1Q9H400 MIR2861-201ENST00000636310 90 ntBASIC16.98■□□□□ 0.31
LIME1Q9H400 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LIME1Q9H400 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LIME1Q9H400 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIME1Q9H400 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIME1Q9H400 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LIME1Q9H400 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.98■□□□□ 0.31
LIME1Q9H400 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.98■□□□□ 0.31
LIME1Q9H400 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.97■□□□□ 0.31
LIME1Q9H400 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.97■□□□□ 0.31
LIME1Q9H400 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.97■□□□□ 0.31
LIME1Q9H400 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
LIME1Q9H400 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LIME1Q9H400 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.97■□□□□ 0.31
LIME1Q9H400 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.97■□□□□ 0.31
LIME1Q9H400 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LIME1Q9H400 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.97■□□□□ 0.31
LIME1Q9H400 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIME1Q9H400 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.97■□□□□ 0.31
LIME1Q9H400 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.31
LIME1Q9H400 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
LIME1Q9H400 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
LIME1Q9H400 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
LIME1Q9H400 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.96■□□□□ 0.31
LIME1Q9H400 AK4P3-201ENST00000418260 669 ntBASIC16.96■□□□□ 0.31
LIME1Q9H400 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
LIME1Q9H400 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.96■□□□□ 0.31
LIME1Q9H400 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.96■□□□□ 0.31
LIME1Q9H400 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.96■□□□□ 0.31
LIME1Q9H400 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.96■□□□□ 0.31
LIME1Q9H400 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.96■□□□□ 0.31
LIME1Q9H400 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LIME1Q9H400 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.96■□□□□ 0.31
LIME1Q9H400 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIME1Q9H400 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.96■□□□□ 0.3
LIME1Q9H400 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.96■□□□□ 0.3
LIME1Q9H400 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.95■□□□□ 0.3
LIME1Q9H400 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
LIME1Q9H400 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.95■□□□□ 0.3
LIME1Q9H400 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.95■□□□□ 0.3
LIME1Q9H400 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
LIME1Q9H400 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.95■□□□□ 0.3
LIME1Q9H400 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.95■□□□□ 0.3
LIME1Q9H400 C2orf69P3-201ENST00000565542 1120 ntBASIC16.95■□□□□ 0.3
LIME1Q9H400 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.95■□□□□ 0.3
LIME1Q9H400 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.95■□□□□ 0.3
LIME1Q9H400 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.95■□□□□ 0.3
LIME1Q9H400 AL031985.4-201ENST00000642138 673 ntBASIC16.95■□□□□ 0.3
LIME1Q9H400 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIME1Q9H400 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LIME1Q9H400 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIME1Q9H400 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIME1Q9H400 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIME1Q9H400 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.94■□□□□ 0.3
LIME1Q9H400 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
LIME1Q9H400 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms