Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 CYP2T3P-201ENST00000601990 817 ntBASIC19.24■□□□□ 0.67
TRIM4Q9C037 AL445228.2-201ENST00000605589 952 ntBASIC19.24■□□□□ 0.67
TRIM4Q9C037 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM4Q9C037 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 AC133561.5-201ENST00000635547 218 ntBASIC19.23■□□□□ 0.67
TRIM4Q9C037 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 AC099778.1-201ENST00000568593 1911 ntBASIC19.23■□□□□ 0.67
TRIM4Q9C037 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM4Q9C037 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM4Q9C037 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 AC008403.3-201ENST00000598924 454 ntBASIC19.22■□□□□ 0.67
TRIM4Q9C037 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 AL049812.1-201ENST00000432563 2267 ntBASIC19.22■□□□□ 0.67
TRIM4Q9C037 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM4Q9C037 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM4Q9C037 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM4Q9C037 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM4Q9C037 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms