Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CNTNAP3BQ96NU0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 RNF165-205ENST00000588679 2904 ntBASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 HLA-G-202ENST00000376815 851 ntBASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 KRT16P4-201ENST00000453883 522 ntBASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 AC012615.1-201ENST00000565797 1299 ntBASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CNTNAP3BQ96NU0 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 AC092667.1-201ENST00000434301 2586 ntBASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CNTNAP3BQ96NU0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
CNTNAP3BQ96NU0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 HBZP1-201ENST00000354915 429 ntBASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 AP001005.1-201ENST00000571755 1248 ntBASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 AP001160.2-201ENST00000596071 487 ntBASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CNTNAP3BQ96NU0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CNTNAP3BQ96NU0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CNTNAP3BQ96NU0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms