Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 AL355355.2-201ENST00000442321 338 ntBASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 MIR4785-201ENST00000585005 73 ntBASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 AL445675.2-201ENST00000620291 557 ntBASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 HLA-A-209ENST00000638375 975 ntBASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PTCHD1Q96NR3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 AL158211.5-201ENST00000623583 2518 ntBASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 AC026471.5-201ENST00000615068 467 ntBASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 AC131212.4-201ENST00000623606 975 ntBASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.23■□□□□ 0.51
PTCHD1Q96NR3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 AL031985.4-201ENST00000642138 673 ntBASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTCHD1Q96NR3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms