Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 AC022616.7-201ENST00000525383 220 ntBASIC18.84■□□□□ 0.61
LMX1AQ8TE12 LINC01238-205ENST00000567549 1107 ntBASIC18.84■□□□□ 0.61
LMX1AQ8TE12 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMX1AQ8TE12 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1AQ8TE12 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1AQ8TE12 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1AQ8TE12 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1AQ8TE12 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LMX1AQ8TE12 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.83■□□□□ 0.61
LMX1AQ8TE12 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.83■□□□□ 0.61
LMX1AQ8TE12 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
LMX1AQ8TE12 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 AC099778.1-201ENST00000568593 1911 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 CA15P1-201ENST00000481698 905 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 COX11P1-201ENST00000489116 835 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 AC063952.2-201ENST00000498792 1227 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 AC141257.4-201ENST00000634557 245 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 AC136944.6-201ENST00000634818 245 ntBASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.82■□□□□ 0.6
LMX1AQ8TE12 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMX1AQ8TE12 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms