Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 AC005181.1-201ENST00000604782 1256 ntBASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
ZNF540Q8NDQ6 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 AC135050.7-201ENST00000624508 2218 ntBASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 DUX4L16-201ENST00000555130 1264 ntBASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 SLC7A5P1-201ENST00000568957 537 ntBASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ZNF540Q8NDQ6 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
ZNF540Q8NDQ6 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 SLC29A4P1-201ENST00000398760 971 ntBASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 AC083906.2-201ENST00000511578 360 ntBASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
ZNF540Q8NDQ6 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms