Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC25.54■■□□□ 1.68
USHBP1Q8N6Y0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 NT5C-210ENST00000582160 860 ntTSL 2 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 AC099778.1-201ENST00000568593 1911 ntBASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
USHBP1Q8N6Y0 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 AL671277.2-201ENST00000458060 996 ntBASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 AL121894.2-201ENST00000602977 491 ntBASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 AC140113.3-201ENST00000605663 199 ntBASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
USHBP1Q8N6Y0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
USHBP1Q8N6Y0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
USHBP1Q8N6Y0 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 AC009947.2-201ENST00000444014 672 ntBASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 MIR4674-201ENST00000582457 87 ntBASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 AC093458.2-201ENST00000623150 629 ntBASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
USHBP1Q8N6Y0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 KRT18P56-201ENST00000507275 550 ntBASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 TBC1D3P2-202ENST00000577902 1649 ntBASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 AL121956.5-201ENST00000625261 221 ntBASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC25.5■■□□□ 1.67
USHBP1Q8N6Y0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 ANKRD18DP-204ENST00000455355 1975 ntBASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 IER3-202ENST00000376377 1350 ntBASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 PRSS44-201ENST00000515154 1146 ntBASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
USHBP1Q8N6Y0 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC25.48■■□□□ 1.67
USHBP1Q8N6Y0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms