Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC096733.2-201ENST00000609937 1394 ntBASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 LINC01006-201ENST00000333319 2292 ntBASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 AL358472.4-201ENST00000633140 710 ntBASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.41■□□□□ 0.7
HDDC3Q8N4P3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.4■□□□□ 0.7
HDDC3Q8N4P3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
HDDC3Q8N4P3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HDDC3Q8N4P3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
HDDC3Q8N4P3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HDDC3Q8N4P3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 AL157384.1-201ENST00000445995 2473 ntBASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 AC116562.4-202ENST00000641738 218 ntBASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HDDC3Q8N4P3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms