Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.21■□□□□ 0.67
NUDCD3Q8IVD9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.21■□□□□ 0.66
NUDCD3Q8IVD9 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 AC116351.2-201ENST00000606540 1585 ntBASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.2■□□□□ 0.66
NUDCD3Q8IVD9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 CNN2P6-201ENST00000439038 900 ntBASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 AL589743.5-201ENST00000616611 1050 ntBASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 AC079598.2-202ENST00000546624 1451 ntBASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 ZNF815P-204ENST00000434898 1737 ntBASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
NUDCD3Q8IVD9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 AC069236.1-201ENST00000604339 616 ntBASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.18■□□□□ 0.66
NUDCD3Q8IVD9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 AC137761.2-201ENST00000561729 223 ntBASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 AC145350.3-201ENST00000569033 163 ntBASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 AC008694.1-202ENST00000636953 945 ntBASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms