Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 KRT18P61-201ENST00000585825 1298 ntBASIC17.26■□□□□ 0.35
CCDC58Q4VC31 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.26■□□□□ 0.35
CCDC58Q4VC31 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CCDC58Q4VC31 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 KRT18P11-201ENST00000435214 1283 ntBASIC17.25■□□□□ 0.35
CCDC58Q4VC31 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC58Q4VC31 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC58Q4VC31 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC58Q4VC31 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms