Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TPM4P67936 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.65■■□□□ 1.06
TPM4P67936 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.65■■□□□ 1.06
TPM4P67936 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.65■■□□□ 1.06
TPM4P67936 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.65■■□□□ 1.06
TPM4P67936 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.65■■□□□ 1.06
TPM4P67936 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TPM4P67936 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TPM4P67936 AC018553.1-201ENST00000616682 1458 ntBASIC21.64■■□□□ 1.06
TPM4P67936 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM4P67936 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.64■■□□□ 1.06
TPM4P67936 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM4P67936 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
TPM4P67936 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TPM4P67936 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.64■■□□□ 1.06
TPM4P67936 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TPM4P67936 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM4P67936 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 AC069236.1-201ENST00000604339 616 ntBASIC21.64■■□□□ 1.05
TPM4P67936 AL589743.5-201ENST00000616611 1050 ntBASIC21.64■■□□□ 1.05
TPM4P67936 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
TPM4P67936 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
TPM4P67936 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM4P67936 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TPM4P67936 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TPM4P67936 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
TPM4P67936 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.64■■□□□ 1.05
TPM4P67936 AC006333.2-201ENST00000607957 2099 ntBASIC21.64■■□□□ 1.05
TPM4P67936 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
TPM4P67936 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM4P67936 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM4P67936 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.63■■□□□ 1.05
TPM4P67936 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 C2orf69P4-201ENST00000565394 541 ntBASIC21.63■■□□□ 1.05
TPM4P67936 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
TPM4P67936 AC008694.1-202ENST00000636953 945 ntBASIC21.63■■□□□ 1.05
TPM4P67936 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.63■■□□□ 1.05
TPM4P67936 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 TEX21P-204ENST00000641479 1693 ntBASIC21.63■■□□□ 1.05
TPM4P67936 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.63■■□□□ 1.05
TPM4P67936 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
TPM4P67936 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TPM4P67936 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.62■■□□□ 1.05
TPM4P67936 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
TPM4P67936 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.62■■□□□ 1.05
TPM4P67936 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TPM4P67936 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.62■■□□□ 1.05
TPM4P67936 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.62■■□□□ 1.05
TPM4P67936 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.62■■□□□ 1.05
TPM4P67936 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TPM4P67936 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TPM4P67936 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms