Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.21■□□□□ 0.83
HDAC4P56524 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.21■□□□□ 0.83
HDAC4P56524 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDAC4P56524 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HDAC4P56524 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HDAC4P56524 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC4P56524 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.2■□□□□ 0.82
HDAC4P56524 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.2■□□□□ 0.82
HDAC4P56524 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HDAC4P56524 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC4P56524 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC4P56524 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
HDAC4P56524 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC4P56524 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.2■□□□□ 0.82
HDAC4P56524 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.2■□□□□ 0.82
HDAC4P56524 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.2■□□□□ 0.82
HDAC4P56524 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDAC4P56524 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
HDAC4P56524 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.19■□□□□ 0.82
HDAC4P56524 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.19■□□□□ 0.82
HDAC4P56524 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 SDHAP1-207ENST00000440850 2000 ntBASIC20.19■□□□□ 0.82
HDAC4P56524 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HDAC4P56524 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.19■□□□□ 0.82
HDAC4P56524 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.19■□□□□ 0.82
HDAC4P56524 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.19■□□□□ 0.82
HDAC4P56524 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
HDAC4P56524 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 LINC01465-201ENST00000408887 1940 ntBASIC20.19■□□□□ 0.82
HDAC4P56524 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.19■□□□□ 0.82
HDAC4P56524 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.19■□□□□ 0.82
HDAC4P56524 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDAC4P56524 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.19■□□□□ 0.82
HDAC4P56524 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HDAC4P56524 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.18■□□□□ 0.82
HDAC4P56524 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
HDAC4P56524 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.18■□□□□ 0.82
HDAC4P56524 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HDAC4P56524 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
HDAC4P56524 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.18■□□□□ 0.82
HDAC4P56524 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.18■□□□□ 0.82
HDAC4P56524 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
HDAC4P56524 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.18■□□□□ 0.82
HDAC4P56524 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.18■□□□□ 0.82
HDAC4P56524 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.18■□□□□ 0.82
HDAC4P56524 HLA-A-209ENST00000638375 975 ntBASIC20.18■□□□□ 0.82
HDAC4P56524 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
HDAC4P56524 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDAC4P56524 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC4P56524 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
HDAC4P56524 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC4P56524 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC4P56524 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.17■□□□□ 0.82
HDAC4P56524 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.17■□□□□ 0.82
HDAC4P56524 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HDAC4P56524 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC4P56524 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms