Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.73■□□□□ 0.59
FOXA1P55317 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
FOXA1P55317 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
FOXA1P55317 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.73■□□□□ 0.59
FOXA1P55317 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.72■□□□□ 0.59
FOXA1P55317 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.72■□□□□ 0.59
FOXA1P55317 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
FOXA1P55317 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.72■□□□□ 0.59
FOXA1P55317 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.72■□□□□ 0.59
FOXA1P55317 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 AL121906.2-201ENST00000621597 723 ntBASIC18.72■□□□□ 0.59
FOXA1P55317 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 KRT8P8-201ENST00000434750 1448 ntBASIC18.72■□□□□ 0.59
FOXA1P55317 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.72■□□□□ 0.59
FOXA1P55317 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.72■□□□□ 0.59
FOXA1P55317 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
FOXA1P55317 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.71■□□□□ 0.59
FOXA1P55317 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.71■□□□□ 0.59
FOXA1P55317 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
FOXA1P55317 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 YBX1P10-201ENST00000444752 975 ntBASIC18.71■□□□□ 0.59
FOXA1P55317 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 AC060766.5-201ENST00000590539 871 ntBASIC18.71■□□□□ 0.59
FOXA1P55317 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.71■□□□□ 0.59
FOXA1P55317 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.71■□□□□ 0.59
FOXA1P55317 AC104581.1-202ENST00000635932 2618 ntBASIC18.71■□□□□ 0.59
FOXA1P55317 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
FOXA1P55317 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
FOXA1P55317 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
FOXA1P55317 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.71■□□□□ 0.59
FOXA1P55317 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.71■□□□□ 0.59
FOXA1P55317 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.7■□□□□ 0.58
FOXA1P55317 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.7■□□□□ 0.58
FOXA1P55317 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.7■□□□□ 0.58
FOXA1P55317 AC120498.8-201ENST00000614275 531 ntBASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms