Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
HTTP42858 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.82■■□□□ 1.08
HTTP42858 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 TPSP2-201ENST00000561760 610 ntBASIC21.82■■□□□ 1.08
HTTP42858 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
HTTP42858 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC21.82■■□□□ 1.08
HTTP42858 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
HTTP42858 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.82■■□□□ 1.08
HTTP42858 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
HTTP42858 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
HTTP42858 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
HTTP42858 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
HTTP42858 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC21.81■■□□□ 1.08
HTTP42858 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.81■■□□□ 1.08
HTTP42858 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.81■■□□□ 1.08
HTTP42858 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 BX276092.5-203ENST00000456199 560 ntBASIC21.81■■□□□ 1.08
HTTP42858 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 KRT8P8-201ENST00000434750 1448 ntBASIC21.81■■□□□ 1.08
HTTP42858 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.81■■□□□ 1.08
HTTP42858 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.81■■□□□ 1.08
HTTP42858 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.81■■□□□ 1.08
HTTP42858 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HTTP42858 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
HTTP42858 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.8■■□□□ 1.08
HTTP42858 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
HTTP42858 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.8■■□□□ 1.08
HTTP42858 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.8■■□□□ 1.08
HTTP42858 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.8■■□□□ 1.08
HTTP42858 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.8■■□□□ 1.08
HTTP42858 HLA-F-220ENST00000434407 884 ntBASIC21.8■■□□□ 1.08
HTTP42858 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.8■■□□□ 1.08
HTTP42858 AC117500.6-201ENST00000624871 588 ntBASIC21.8■■□□□ 1.08
HTTP42858 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HTTP42858 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.8■■□□□ 1.08
HTTP42858 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
HTTP42858 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HTTP42858 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HTTP42858 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HTTP42858 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HTTP42858 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HTTP42858 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HTTP42858 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
HTTP42858 IL9RP2-201ENST00000423948 1312 ntBASIC21.79■■□□□ 1.08
HTTP42858 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.78■■□□□ 1.08
HTTP42858 AC079776.4-201ENST00000511039 504 ntBASIC21.78■■□□□ 1.08
HTTP42858 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.78■■□□□ 1.08
HTTP42858 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.78■■□□□ 1.08
HTTP42858 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.78■■□□□ 1.08
HTTP42858 LINC00167-201ENST00000530583 1419 ntBASIC21.78■■□□□ 1.08
HTTP42858 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
HTTP42858 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.78■■□□□ 1.08
HTTP42858 LINC02084-201ENST00000606069 1096 ntBASIC21.78■■□□□ 1.08
HTTP42858 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.78■■□□□ 1.08
HTTP42858 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.78■■□□□ 1.08
HTTP42858 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 CHCHD2P8-201ENST00000429873 447 ntBASIC21.78■■□□□ 1.08
HTTP42858 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.78■■□□□ 1.08
HTTP42858 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.78■■□□□ 1.08
HTTP42858 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HTTP42858 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.77■■□□□ 1.08
HTTP42858 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HTTP42858 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms