Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.95■□□□□ 0.62
SHMT2P34897 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.94■□□□□ 0.62
SHMT2P34897 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SHMT2P34897 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.94■□□□□ 0.62
SHMT2P34897 AF186192.3-201ENST00000583427 947 ntBASIC18.94■□□□□ 0.62
SHMT2P34897 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.94■□□□□ 0.62
SHMT2P34897 Z99916.2-201ENST00000604037 246 ntBASIC18.94■□□□□ 0.62
SHMT2P34897 AL353708.3-201ENST00000610272 989 ntBASIC18.94■□□□□ 0.62
SHMT2P34897 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.94■□□□□ 0.62
SHMT2P34897 TNXA-203ENST00000507684 2038 ntBASIC18.94■□□□□ 0.62
SHMT2P34897 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHMT2P34897 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.93■□□□□ 0.62
SHMT2P34897 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SHMT2P34897 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 KRT8P8-201ENST00000434750 1448 ntBASIC18.93■□□□□ 0.62
SHMT2P34897 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.93■□□□□ 0.62
SHMT2P34897 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.93■□□□□ 0.62
SHMT2P34897 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.93■□□□□ 0.62
SHMT2P34897 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SHMT2P34897 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.93■□□□□ 0.62
SHMT2P34897 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.93■□□□□ 0.62
SHMT2P34897 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 AC004408.2-201ENST00000623613 2777 ntBASIC18.93■□□□□ 0.62
SHMT2P34897 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.93■□□□□ 0.62
SHMT2P34897 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.93■□□□□ 0.62
SHMT2P34897 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHMT2P34897 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.92■□□□□ 0.62
SHMT2P34897 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SHMT2P34897 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 AL049637.2-201ENST00000641778 930 ntBASIC18.92■□□□□ 0.62
SHMT2P34897 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.92■□□□□ 0.62
SHMT2P34897 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.92■□□□□ 0.62
SHMT2P34897 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.92■□□□□ 0.62
SHMT2P34897 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHMT2P34897 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SHMT2P34897 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SHMT2P34897 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SHMT2P34897 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.91■□□□□ 0.62
SHMT2P34897 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SHMT2P34897 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
SHMT2P34897 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms