Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC1P18887 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC1P18887 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
XRCC1P18887 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC1P18887 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
XRCC1P18887 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.29■□□□□ 0.68
XRCC1P18887 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
XRCC1P18887 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
XRCC1P18887 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 AC116351.2-201ENST00000606540 1585 ntBASIC19.28■□□□□ 0.68
XRCC1P18887 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.28■□□□□ 0.68
XRCC1P18887 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
XRCC1P18887 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.28■□□□□ 0.68
XRCC1P18887 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
XRCC1P18887 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.28■□□□□ 0.68
XRCC1P18887 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 AC004264.1-201ENST00000608354 794 ntBASIC19.28■□□□□ 0.68
XRCC1P18887 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.28■□□□□ 0.68
XRCC1P18887 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
XRCC1P18887 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
XRCC1P18887 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
XRCC1P18887 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC1P18887 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.68
XRCC1P18887 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.27■□□□□ 0.68
XRCC1P18887 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 AL691432.2-201ENST00000607222 2038 ntBASIC19.27■□□□□ 0.68
XRCC1P18887 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
XRCC1P18887 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
XRCC1P18887 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
XRCC1P18887 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.27■□□□□ 0.68
XRCC1P18887 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
XRCC1P18887 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.27■□□□□ 0.68
XRCC1P18887 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
XRCC1P18887 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC1P18887 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
XRCC1P18887 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
XRCC1P18887 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
XRCC1P18887 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 TMEM179-206ENST00000616017 1645 ntBASIC19.26■□□□□ 0.67
XRCC1P18887 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
XRCC1P18887 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.26■□□□□ 0.67
XRCC1P18887 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
XRCC1P18887 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.26■□□□□ 0.67
XRCC1P18887 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 MIR4497-201ENST00000583208 89 ntBASIC19.26■□□□□ 0.67
XRCC1P18887 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
XRCC1P18887 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.26■□□□□ 0.67
XRCC1P18887 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
XRCC1P18887 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
XRCC1P18887 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms