Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX3O95343 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.9■□□□□ 0.62
SIX3O95343 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX3O95343 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.9■□□□□ 0.62
SIX3O95343 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.9■□□□□ 0.62
SIX3O95343 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.9■□□□□ 0.62
SIX3O95343 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.9■□□□□ 0.62
SIX3O95343 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
SIX3O95343 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SIX3O95343 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 KRT8P8-201ENST00000434750 1448 ntBASIC18.9■□□□□ 0.62
SIX3O95343 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.9■□□□□ 0.62
SIX3O95343 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SIX3O95343 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
SIX3O95343 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SIX3O95343 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SIX3O95343 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.62
SIX3O95343 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX3O95343 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX3O95343 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.89■□□□□ 0.61
SIX3O95343 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 AC133041.1-202ENST00000642053 222 ntBASIC18.89■□□□□ 0.61
SIX3O95343 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX3O95343 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.89■□□□□ 0.61
SIX3O95343 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
SIX3O95343 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.89■□□□□ 0.61
SIX3O95343 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX3O95343 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.88■□□□□ 0.61
SIX3O95343 AC090192.1-201ENST00000517740 490 ntBASIC18.88■□□□□ 0.61
SIX3O95343 AC142086.2-201ENST00000569753 217 ntBASIC18.88■□□□□ 0.61
SIX3O95343 AC008687.6-201ENST00000596318 630 ntBASIC18.88■□□□□ 0.61
SIX3O95343 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX3O95343 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX3O95343 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX3O95343 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX3O95343 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms