Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
RIPK2O43353 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.66■□□□□ 0.74
RIPK2O43353 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
RIPK2O43353 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.66■□□□□ 0.74
RIPK2O43353 AL589743.5-201ENST00000616611 1050 ntBASIC19.66■□□□□ 0.74
RIPK2O43353 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RIPK2O43353 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
RIPK2O43353 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RIPK2O43353 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.66■□□□□ 0.74
RIPK2O43353 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
RIPK2O43353 NOC2LP1-202ENST00000452600 2235 ntBASIC19.66■□□□□ 0.74
RIPK2O43353 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.65■□□□□ 0.74
RIPK2O43353 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 SDHAP1-207ENST00000440850 2000 ntBASIC19.65■□□□□ 0.74
RIPK2O43353 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
RIPK2O43353 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 MIR638-201ENST00000385237 100 ntBASIC19.65■□□□□ 0.74
RIPK2O43353 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RIPK2O43353 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.65■□□□□ 0.74
RIPK2O43353 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.65■□□□□ 0.74
RIPK2O43353 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.65■□□□□ 0.74
RIPK2O43353 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
RIPK2O43353 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
RIPK2O43353 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.65■□□□□ 0.74
RIPK2O43353 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RIPK2O43353 IRX1P1-201ENST00000438849 1838 ntBASIC19.65■□□□□ 0.74
RIPK2O43353 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RIPK2O43353 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.64■□□□□ 0.73
RIPK2O43353 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIPK2O43353 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.64■□□□□ 0.73
RIPK2O43353 CYP2T1P-201ENST00000432607 1285 ntBASIC19.64■□□□□ 0.73
RIPK2O43353 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.64■□□□□ 0.73
RIPK2O43353 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.64■□□□□ 0.73
RIPK2O43353 DUX4L16-201ENST00000555130 1264 ntBASIC19.64■□□□□ 0.73
RIPK2O43353 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIPK2O43353 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIPK2O43353 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RIPK2O43353 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.64■□□□□ 0.73
RIPK2O43353 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIPK2O43353 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RIPK2O43353 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
RIPK2O43353 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 PCDHB18P-201ENST00000524813 2368 ntBASIC19.63■□□□□ 0.73
RIPK2O43353 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.63■□□□□ 0.73
RIPK2O43353 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.63■□□□□ 0.73
RIPK2O43353 AC104417.2-201ENST00000562989 1793 ntBASIC19.63■□□□□ 0.73
RIPK2O43353 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RIPK2O43353 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RIPK2O43353 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RIPK2O43353 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.63■□□□□ 0.73
RIPK2O43353 AC069236.1-201ENST00000604339 616 ntBASIC19.63■□□□□ 0.73
RIPK2O43353 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.63■□□□□ 0.73
RIPK2O43353 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.63■□□□□ 0.73
RIPK2O43353 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RIPK2O43353 AC020763.4-201ENST00000623414 4170 ntBASIC19.62■□□□□ 0.73
RIPK2O43353 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RIPK2O43353 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.62■□□□□ 0.73
RIPK2O43353 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RIPK2O43353 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.62■□□□□ 0.73
RIPK2O43353 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
RIPK2O43353 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
RIPK2O43353 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
RIPK2O43353 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RIPK2O43353 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
RIPK2O43353 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RIPK2O43353 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms