Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.84■□□□□ 0.61
HDAC3O15379 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.84■□□□□ 0.61
HDAC3O15379 AC016769.1-201ENST00000409132 1010 ntBASIC18.84■□□□□ 0.61
HDAC3O15379 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.84■□□□□ 0.61
HDAC3O15379 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 AC011767.1-201ENST00000617410 1153 ntBASIC18.84■□□□□ 0.61
HDAC3O15379 BID-214ENST00000617586 542 ntTSL 5 BASIC18.84■□□□□ 0.61
HDAC3O15379 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.84■□□□□ 0.61
HDAC3O15379 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.84■□□□□ 0.61
HDAC3O15379 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC3O15379 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC3O15379 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDAC3O15379 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.83■□□□□ 0.6
HDAC3O15379 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.83■□□□□ 0.6
HDAC3O15379 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.83■□□□□ 0.6
HDAC3O15379 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.83■□□□□ 0.6
HDAC3O15379 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.83■□□□□ 0.6
HDAC3O15379 AL390961.4-201ENST00000623958 2535 ntBASIC18.83■□□□□ 0.6
HDAC3O15379 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.83■□□□□ 0.6
HDAC3O15379 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HDAC3O15379 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDAC3O15379 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC3O15379 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.82■□□□□ 0.6
HDAC3O15379 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.82■□□□□ 0.6
HDAC3O15379 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC3O15379 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.82■□□□□ 0.6
HDAC3O15379 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 AC231657.2-201ENST00000624556 255 ntBASIC18.82■□□□□ 0.6
HDAC3O15379 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC3O15379 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.82■□□□□ 0.6
HDAC3O15379 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HDAC3O15379 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 FP475955.4-201ENST00000623131 1990 ntBASIC18.82■□□□□ 0.6
HDAC3O15379 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HDAC3O15379 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDAC3O15379 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.82■□□□□ 0.6
HDAC3O15379 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HDAC3O15379 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
HDAC3O15379 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HDAC3O15379 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HDAC3O15379 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.81■□□□□ 0.6
HDAC3O15379 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.81■□□□□ 0.6
HDAC3O15379 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.81■□□□□ 0.6
HDAC3O15379 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 AL512625.2-201ENST00000417533 625 ntBASIC18.81■□□□□ 0.6
HDAC3O15379 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.81■□□□□ 0.6
HDAC3O15379 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HDAC3O15379 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.81■□□□□ 0.6
HDAC3O15379 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.81■□□□□ 0.6
HDAC3O15379 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HDAC3O15379 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HDAC3O15379 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.8■□□□□ 0.6
HDAC3O15379 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HDAC3O15379 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.8■□□□□ 0.6
HDAC3O15379 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms