Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
UBFD1O14562 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.78■□□□□ 0.6
UBFD1O14562 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UBFD1O14562 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 AC120498.9-201ENST00000339021 3867 ntBASIC18.77■□□□□ 0.6
UBFD1O14562 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
UBFD1O14562 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.77■□□□□ 0.6
UBFD1O14562 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.77■□□□□ 0.6
UBFD1O14562 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.77■□□□□ 0.6
UBFD1O14562 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.77■□□□□ 0.6
UBFD1O14562 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.77■□□□□ 0.6
UBFD1O14562 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.77■□□□□ 0.6
UBFD1O14562 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.77■□□□□ 0.6
UBFD1O14562 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
UBFD1O14562 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.77■□□□□ 0.6
UBFD1O14562 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UBFD1O14562 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
UBFD1O14562 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.77■□□□□ 0.59
UBFD1O14562 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
UBFD1O14562 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
UBFD1O14562 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
UBFD1O14562 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.76■□□□□ 0.59
UBFD1O14562 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.76■□□□□ 0.59
UBFD1O14562 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
UBFD1O14562 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.76■□□□□ 0.59
UBFD1O14562 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 SLC29A4P1-201ENST00000398760 971 ntBASIC18.76■□□□□ 0.59
UBFD1O14562 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.76■□□□□ 0.59
UBFD1O14562 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.76■□□□□ 0.59
UBFD1O14562 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 AL121906.2-201ENST00000621597 723 ntBASIC18.76■□□□□ 0.59
UBFD1O14562 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 IRX1P1-201ENST00000438849 1838 ntBASIC18.76■□□□□ 0.59
UBFD1O14562 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.76■□□□□ 0.59
UBFD1O14562 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.76■□□□□ 0.59
UBFD1O14562 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
UBFD1O14562 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.75■□□□□ 0.59
UBFD1O14562 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.75■□□□□ 0.59
UBFD1O14562 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.75■□□□□ 0.59
UBFD1O14562 AC097658.1-201ENST00000475555 843 ntBASIC18.75■□□□□ 0.59
UBFD1O14562 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.75■□□□□ 0.59
UBFD1O14562 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.75■□□□□ 0.59
UBFD1O14562 PNMA6B-201ENST00000538162 1200 ntBASIC18.75■□□□□ 0.59
UBFD1O14562 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.75■□□□□ 0.59
UBFD1O14562 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.75■□□□□ 0.59
UBFD1O14562 MIR4758-201ENST00000577688 71 ntBASIC18.75■□□□□ 0.59
UBFD1O14562 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.75■□□□□ 0.59
UBFD1O14562 AC083880.1-201ENST00000608266 535 ntBASIC18.75■□□□□ 0.59
UBFD1O14562 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.75■□□□□ 0.59
UBFD1O14562 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.75■□□□□ 0.59
UBFD1O14562 AC009113.1-201ENST00000570267 2443 ntBASIC18.75■□□□□ 0.59
UBFD1O14562 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
UBFD1O14562 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
UBFD1O14562 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UBFD1O14562 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms