Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
SMIM28A0A1B0GU29 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SMIM28A0A1B0GU29 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.79■□□□□ 0.92
SMIM28A0A1B0GU29 AC125437.2-201ENST00000625180 2167 ntBASIC20.79■□□□□ 0.92
SMIM28A0A1B0GU29 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 INGX-201ENST00000359239 846 ntBASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.78■□□□□ 0.92
SMIM28A0A1B0GU29 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 AC005521.1-201ENST00000393351 872 ntBASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 ECEL1P2-202ENST00000465689 757 ntBASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMIM28A0A1B0GU29 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMIM28A0A1B0GU29 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMIM28A0A1B0GU29 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SMIM28A0A1B0GU29 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
SMIM28A0A1B0GU29 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SMIM28A0A1B0GU29 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 AC113347.1-201ENST00000413321 391 ntBASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 SLC25A3P1-201ENST00000443844 931 ntBASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 CKBP1-201ENST00000565489 1086 ntBASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 RN7SL850P-201ENST00000579959 291 ntBASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.76■□□□□ 0.91
SMIM28A0A1B0GU29 TREX1-205ENST00000625293 1783 ntBASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMIM28A0A1B0GU29 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 TERF1P1-201ENST00000311003 1181 ntBASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms