Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
MSH5O43196 AP001784.1-201ENST00000624107 428 ntBASIC10.95□□□□□ -0.66
MSH5O43196 MIR3120-201ENST00000636555 81 ntBASIC10.95□□□□□ -0.66
MSH5O43196 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
MSH5O43196 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC10.95□□□□□ -0.66
MSH5O43196 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
MSH5O43196 AC061975.7-201ENST00000592016 2692 ntBASIC10.95□□□□□ -0.66
MSH5O43196 NCEH1-206ENST00000543711 4062 ntTSL 2 BASIC10.95□□□□□ -0.66
MSH5O43196 AC092593.1-201ENST00000515413 1815 ntBASIC10.95□□□□□ -0.66
MSH5O43196 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
MSH5O43196 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC10.94□□□□□ -0.66
MSH5O43196 NOS1-202ENST00000338101 4462 ntTSL 5 BASIC10.94□□□□□ -0.66
MSH5O43196 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC10.94□□□□□ -0.66
MSH5O43196 AC139769.1-204ENST00000472297 1931 ntBASIC10.94□□□□□ -0.66
MSH5O43196 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 RNU6-1125P-201ENST00000363601 107 ntBASIC10.94□□□□□ -0.66
MSH5O43196 RN7SKP78-201ENST00000364711 318 ntBASIC10.94□□□□□ -0.66
MSH5O43196 RNA5SP355-201ENST00000365317 135 ntBASIC10.94□□□□□ -0.66
MSH5O43196 SNORA51.6-201ENST00000384151 125 ntBASIC10.94□□□□□ -0.66
MSH5O43196 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 GAPDHP55-201ENST00000423136 803 ntBASIC10.94□□□□□ -0.66
MSH5O43196 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 AC034236.1-201ENST00000469891 373 ntBASIC10.94□□□□□ -0.66
MSH5O43196 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC10.94□□□□□ -0.66
MSH5O43196 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC10.94□□□□□ -0.66
MSH5O43196 AC007952.7-201ENST00000583141 757 ntBASIC10.94□□□□□ -0.66
MSH5O43196 MIR4293-201ENST00000584305 78 ntBASIC10.94□□□□□ -0.66
MSH5O43196 MIR3159-201ENST00000584572 74 ntBASIC10.94□□□□□ -0.66
MSH5O43196 RN7SL113P-201ENST00000619959 299 ntBASIC10.94□□□□□ -0.66
MSH5O43196 AL589994.2-201ENST00000621124 579 ntBASIC10.94□□□□□ -0.66
MSH5O43196 PFN1P2-202ENST00000621347 397 ntBASIC10.94□□□□□ -0.66
MSH5O43196 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC10.94□□□□□ -0.66
MSH5O43196 ARHGAP11A-202ENST00000543522 3152 ntTSL 2 BASIC10.94□□□□□ -0.66
MSH5O43196 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
MSH5O43196 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 IGSF1-205ENST00000370904 5413 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
MSH5O43196 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
MSH5O43196 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 GIMAP8-201ENST00000307271 4184 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 TTC41P-204ENST00000548897 2998 ntTSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 CFAP47-201ENST00000297866 3608 ntTSL 2 BASIC10.93□□□□□ -0.66
MSH5O43196 IQGAP1-214ENST00000560738 3602 ntTSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 IL31RA-205ENST00000396836 2426 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 AC008555.1-201ENST00000561778 2757 ntBASIC10.93□□□□□ -0.66
MSH5O43196 RNY1P10-201ENST00000363268 113 ntBASIC10.93□□□□□ -0.66
MSH5O43196 RNU6-381P-201ENST00000391259 108 ntBASIC10.93□□□□□ -0.66
MSH5O43196 ISY1-202ENST00000393292 988 ntTSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 AC012506.4-202ENST00000430051 572 ntTSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 SUMO2P10-201ENST00000452006 288 ntBASIC10.93□□□□□ -0.66
MSH5O43196 AC007879.2-201ENST00000454444 551 ntTSL 4 BASIC10.93□□□□□ -0.66
MSH5O43196 SNRPCP2-201ENST00000504370 475 ntBASIC10.93□□□□□ -0.66
MSH5O43196 IGHVIII-26-1-201ENST00000520387 250 ntBASIC10.93□□□□□ -0.66
MSH5O43196 AC008083.2-201ENST00000546707 476 ntBASIC10.93□□□□□ -0.66
MSH5O43196 LINC01974-201ENST00000575126 494 ntTSL 3 BASIC10.93□□□□□ -0.66
MSH5O43196 AC093063.1-201ENST00000599317 363 ntBASIC10.93□□□□□ -0.66
MSH5O43196 AL451054.3-201ENST00000611115 776 ntBASIC10.93□□□□□ -0.66
MSH5O43196 AC006001.4-201ENST00000622243 395 ntBASIC10.93□□□□□ -0.66
MSH5O43196 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 CHRDL1-201ENST00000372042 1934 ntAPPRIS ALT1 TSL 2 BASIC10.93□□□□□ -0.66
MSH5O43196 AC019155.2-201ENST00000420224 1918 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 HM13-224ENST00000498035 3932 ntTSL 2 BASIC10.93□□□□□ -0.66
MSH5O43196 AL157713.1-201ENST00000379752 1531 ntBASIC10.93□□□□□ -0.66
MSH5O43196 LAMA3-207ENST00000587184 5007 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
MSH5O43196 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
MSH5O43196 LINC01721-201ENST00000457274 2376 ntTSL 2 BASIC10.92□□□□□ -0.66
MSH5O43196 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC10.92□□□□□ -0.66
MSH5O43196 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
MSH5O43196 TMEM213-203ENST00000442682 4167 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
MSH5O43196 AC104619.3-201ENST00000509116 1387 ntBASIC10.92□□□□□ -0.66
MSH5O43196 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
MSH5O43196 AP002364.1-201ENST00000623330 3386 ntBASIC10.92□□□□□ -0.66
MSH5O43196 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
MSH5O43196 AKAP12-203ENST00000359755 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
MSH5O43196 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
MSH5O43196 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
MSH5O43196 RNA5SP149-201ENST00000364952 92 ntBASIC10.92□□□□□ -0.66
MSH5O43196 RNU6-728P-201ENST00000365375 104 ntBASIC10.92□□□□□ -0.66
MSH5O43196 RNU6-1226P-201ENST00000384317 107 ntBASIC10.92□□□□□ -0.66
MSH5O43196 RNU6-1179P-201ENST00000384667 107 ntBASIC10.92□□□□□ -0.66
MSH5O43196 MSRB1P1-201ENST00000396851 354 ntBASIC10.92□□□□□ -0.66
MSH5O43196 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC10.92□□□□□ -0.66
MSH5O43196 NEFLP1-201ENST00000436364 984 ntBASIC10.92□□□□□ -0.66
MSH5O43196 RANP8-201ENST00000444720 713 ntBASIC10.92□□□□□ -0.66
MSH5O43196 UBA52P3-201ENST00000491303 382 ntBASIC10.92□□□□□ -0.66
MSH5O43196 STH-201ENST00000537309 445 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
MSH5O43196 AC120498.6-201ENST00000564700 338 ntTSL 3 BASIC10.92□□□□□ -0.66
MSH5O43196 MIR4518-201ENST00000580665 83 ntBASIC10.92□□□□□ -0.66
MSH5O43196 MIR5008-201ENST00000584300 94 ntBASIC10.92□□□□□ -0.66
MSH5O43196 AC022239.4-201ENST00000602626 504 ntBASIC10.92□□□□□ -0.66
MSH5O43196 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms