Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HMGB1P10-201ENST00000395823 563 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN4P29074 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC234779.1-201ENST00000425910 285 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 RWDD4P2-201ENST00000426392 563 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 VDAC1P6-201ENST00000430062 855 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 XKRY2-201ENST00000442362 1093 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 AC108463.1-201ENST00000450258 347 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 RWDD4P1-201ENST00000488019 565 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 AC017037.1-201ENST00000508460 471 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN4P29074 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PTPN4P29074 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC233266.2-201ENST00000567067 528 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 MIR4458-201ENST00000578872 75 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC012603.1-201ENST00000606424 528 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 AC005962.2-201ENST00000611427 652 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.37□□□□□ -1.71
PTPN4P29074 AC007546.2-201ENST00000623996 360 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 CR392039.4-201ENST00000624968 501 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 RAD17P1-201ENST00000418130 2042 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 AC027290.2-201ENST00000623210 18662 ntBASIC4.37□□□□□ -1.71
PTPN4P29074 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.37□□□□□ -1.71
PTPN4P29074 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.37□□□□□ -1.71
PTPN4P29074 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PTPN4P29074 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PTPN4P29074 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN4P29074 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN4P29074 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.36□□□□□ -1.71
PTPN4P29074 AC125257.1-201ENST00000560400 2930 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 RNF6P1-201ENST00000444889 1784 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
PTPN4P29074 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.36□□□□□ -1.71
PTPN4P29074 SNORA74C-2-201ENST00000411179 201 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 GAPDHP49-201ENST00000421421 961 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN4P29074 MTND4LP7-201ENST00000431728 294 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN4P29074 YWHAZP2-201ENST00000440317 728 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 HMGB3P22-202ENST00000451823 572 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 VN1R32P-201ENST00000452234 905 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AC133473.1-201ENST00000455173 299 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AL133477.1-201ENST00000457472 514 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AC011276.1-201ENST00000469688 323 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AC011037.1-201ENST00000483964 558 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 AC007016.1-201ENST00000512110 244 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.36□□□□□ -1.71
PTPN4P29074 AC107016.1-201ENST00000550463 337 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN4P29074 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN4P29074 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN4P29074 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.36□□□□□ -1.71
PTPN4P29074 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 AC115286.1-201ENST00000604298 434 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AC025175.1-201ENST00000606482 759 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 AL359715.5-201ENST00000623431 443 ntBASIC4.36□□□□□ -1.71
PTPN4P29074 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.36□□□□□ -1.71
PTPN4P29074 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PTPN4P29074 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.36□□□□□ -1.71
PTPN4P29074 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
PTPN4P29074 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
PTPN4P29074 AC006971.1-201ENST00000407916 4486 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
PTPN4P29074 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
PTPN4P29074 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.35□□□□□ -1.71
PTPN4P29074 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
PTPN4P29074 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.35□□□□□ -1.71
PTPN4P29074 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.35□□□□□ -1.71
PTPN4P29074 AC139769.1-204ENST00000472297 1931 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
PTPN4P29074 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.35□□□□□ -1.71
PTPN4P29074 RNU6-452P-201ENST00000384406 107 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 TAF9BP2-201ENST00000400856 499 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 AL590290.1-201ENST00000405336 380 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 MTND4P11-201ENST00000417020 1058 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.35□□□□□ -1.71
PTPN4P29074 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.35□□□□□ -1.71
PTPN4P29074 MTCO1P52-201ENST00000433928 531 ntBASIC4.35□□□□□ -1.71
PTPN4P29074 AL513321.1-201ENST00000441175 761 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms