RNA–Protein interactions for RNA: ENST00000617432.4

CUL3-216, Transcript of cullin 3, humanhuman

TSL 5 BASIC

Gene CUL3, Length 1,426 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-216ENST00000617432 AEBP2Q6ZN18 517 aaPredicted RBP28.74■■■□□ 2.19
CUL3-216ENST00000617432 CHIC1Q5VXU3 224 aa26.93■■□□□ 1.9
CUL3-216ENST00000617432 SENP3Q9H4L4 574 aaPredicted RBP24.68■■□□□ 1.54
CUL3-216ENST00000617432 PHF23Q9BUL5 403 aaPredicted RBP24.25■■□□□ 1.47
CUL3-216ENST00000617432 FOXD1Q16676 465 aa23.01■■□□□ 1.27
CUL3-216ENST00000617432 POTEDQ86YR6 584 aa22.14■■□□□ 1.14
CUL3-216ENST00000617432 MSH5O43196 834 aa21.8■■□□□ 1.08
CUL3-216ENST00000617432 PIAS4Q8N2W9 510 aaPredicted RBP21.38■■□□□ 1.01
CUL3-216ENST00000617432 PLPPR3Q6T4P5 718 aa21.21■□□□□ 0.99
CUL3-216ENST00000617432 PPP6R1Q9UPN7 881 aa21.08■□□□□ 0.97
CUL3-216ENST00000617432 ADRA2BP18089 450 aa20.99■□□□□ 0.95
CUL3-216ENST00000617432 DMRT2Q9Y5R5 561 aa19.48■□□□□ 0.71
CUL3-216ENST00000617432 MAPK8IP2Q13387 824 aaPredicted RBP19.43■□□□□ 0.7
CUL3-216ENST00000617432 SCAF1Q9H7N4 1312 aaKnown RBP19.3■□□□□ 0.68
CUL3-216ENST00000617432 CACNB1Q02641 598 aaPredicted RBP19.01■□□□□ 0.63
CUL3-216ENST00000617432 DCAF8L1A6NGE4 600 aa18.66■□□□□ 0.58
CUL3-216ENST00000617432 HOXD11P31277 338 aaPredicted RBP18.55■□□□□ 0.56
CUL3-216ENST00000617432 RNF39Q9H2S5 420 aa18.53■□□□□ 0.56
CUL3-216ENST00000617432 PPP4R3CPQ6ZMV5 832 aa18.5■□□□□ 0.55
CUL3-216ENST00000617432 CNKSR2Q8WXI2 1034 aa18.31■□□□□ 0.52
CUL3-216ENST00000617432 RNF216Q9NWF9 866 aaPredicted RBP18.27■□□□□ 0.52
CUL3-216ENST00000617432 C1QBPQ07021 282 aaKnown RBP18.26■□□□□ 0.51
CUL3-216ENST00000617432 DNAJC5BQ9UF47 199 aa18.08■□□□□ 0.49
CUL3-216ENST00000617432 NCBP3Q53F19 620 aaKnown RBP17.67■□□□□ 0.42
CUL3-216ENST00000617432 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.67■□□□□ 0.423e-6■□□□□ 11.3
CUL3-216ENST00000617432 NPM3O75607 178 aaKnown RBP17.35■□□□□ 0.37
CUL3-216ENST00000617432 POTEHQ6S545 545 aa17.26■□□□□ 0.35
CUL3-216ENST00000617432 U3KPZ7 1027 aaPredicted RBP17.21■□□□□ 0.35
CUL3-216ENST00000617432 DSG3P32926 999 aa17.16■□□□□ 0.34
CUL3-216ENST00000617432 CAPN15O75808 1086 aa17.13■□□□□ 0.33
CUL3-216ENST00000617432 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
CUL3-216ENST00000617432 APLP2Q06481 763 aa16.77■□□□□ 0.27
CUL3-216ENST00000617432 TRHP20396 242 aaPredicted RBP16.71■□□□□ 0.27
CUL3-216ENST00000617432 SLC4A2P04920 1241 aa16.7■□□□□ 0.26
CUL3-216ENST00000617432 ZNF219Q9P2Y4 722 aaPredicted RBP16.7■□□□□ 0.26
CUL3-216ENST00000617432 ABCB7O75027 752 aa16.65■□□□□ 0.26
CUL3-216ENST00000617432 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.61■□□□□ 0.25
CUL3-216ENST00000617432 HNRNPUL2Q1KMD3 747 aaKnown RBP16.61■□□□□ 0.25
CUL3-216ENST00000617432 KCNA4P22459 653 aa16.52■□□□□ 0.23
CUL3-216ENST00000617432 SAMD1Q6SPF0 538 aaPredicted RBP16.47■□□□□ 0.23
CUL3-216ENST00000617432 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
CUL3-216ENST00000617432 CHRDL2Q6WN34 429 aa16.26■□□□□ 0.19
CUL3-216ENST00000617432 POLA2Q14181 598 aa16.16■□□□□ 0.18
CUL3-216ENST00000617432 MYCNP04198 464 aaPredicted RBP16.1■□□□□ 0.17
CUL3-216ENST00000617432 SP7Q8TDD2 431 aaPredicted RBP15.94■□□□□ 0.14
CUL3-216ENST00000617432 AKT1S1Q96B36 256 aa15.94■□□□□ 0.14
CUL3-216ENST00000617432 ZBTB12Q9Y330 459 aaPredicted RBP15.85■□□□□ 0.13
CUL3-216ENST00000617432 REM2Q8IYK8 340 aaPredicted RBP15.76■□□□□ 0.11
CUL3-216ENST00000617432 PIP4P2Q8N4L2 257 aa15.74■□□□□ 0.11
CUL3-216ENST00000617432 ATF5Q9Y2D1 282 aaPredicted RBP15.69■□□□□ 0.1
CUL3-216ENST00000617432 OSCARQ8IYS5 282 aa15.63■□□□□ 0.09
CUL3-216ENST00000617432 FOXD4L1Q9NU39 408 aa15.62■□□□□ 0.09
CUL3-216ENST00000617432 HAX1O00165 279 aa15.61■□□□□ 0.09
CUL3-216ENST00000617432 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
CUL3-216ENST00000617432 FXR2P51116 673 aaKnown RBP eCLIP15.58■□□□□ 0.08
CUL3-216ENST00000617432 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
CUL3-216ENST00000617432 EVX2Q03828 476 aa15.34■□□□□ 0.05
CUL3-216ENST00000617432 SPDYE2BA6NHP3 402 aa15.29■□□□□ 0.04
CUL3-216ENST00000617432 SPDYE6P0CI01 402 aa15.29■□□□□ 0.04
CUL3-216ENST00000617432 SPDYE2Q495Y8 402 aa15.29■□□□□ 0.04
CUL3-216ENST00000617432 ATXN8OSP0DMR3 200 aa15.24■□□□□ 0.03
CUL3-216ENST00000617432 FBLN2P98095 1184 aa15.21■□□□□ 0.03
CUL3-216ENST00000617432 PRKAR2AP13861 404 aaKnown RBP15.18■□□□□ 0.02
CUL3-216ENST00000617432 SPDYE1Q8NFV5 336 aaPredicted RBP15.16■□□□□ 0.02
CUL3-216ENST00000617432 ZBTB22O15209 634 aa15.15■□□□□ 0.02
CUL3-216ENST00000617432 CLEC11AQ9Y240 323 aa15.11■□□□□ 0.01
CUL3-216ENST00000617432 C19orf67A6NJJ6 358 aa15.1■□□□□ 0.01
CUL3-216ENST00000617432 GABBR2O75899 941 aa15□□□□□ -0.01
CUL3-216ENST00000617432 ZNF692Q9BU19 519 aaPredicted RBP15□□□□□ -0.01
CUL3-216ENST00000617432 SSUH2Q9Y2M2 353 aa15□□□□□ -0.01
CUL3-216ENST00000617432 MKRN4PQ13434 485 aaPredicted RBP14.96□□□□□ -0.01
CUL3-216ENST00000617432 LHX8Q68G74 356 aa14.94□□□□□ -0.02
CUL3-216ENST00000617432 CHADLQ6NUI6 762 aa14.85□□□□□ -0.03
CUL3-216ENST00000617432 PRR29P0C7W0 189 aa14.83□□□□□ -0.04
CUL3-216ENST00000617432 PABPN1Q86U42 306 aaKnown RBP eCLIP14.75□□□□□ -0.05
CUL3-216ENST00000617432 CLCN6P51797 869 aa14.67□□□□□ -0.06
CUL3-216ENST00000617432 CD44P16070 742 aaKnown RBP14.66□□□□□ -0.06
CUL3-216ENST00000617432 POTEIP0CG38 1075 aa14.65□□□□□ -0.06
CUL3-216ENST00000617432 FARP1Q9Y4F1 1045 aaPredicted RBP14.63□□□□□ -0.07
CUL3-216ENST00000617432 DCBLD2Q96PD2 775 aa14.5□□□□□ -0.09
CUL3-216ENST00000617432 ZNF579Q8NAF0 562 aaKnown RBP14.43□□□□□ -0.1
CUL3-216ENST00000617432 PLSCR2Q9NRY7 297 aa14.41□□□□□ -0.1
CUL3-216ENST00000617432 ZRANB1Q9UGI0 708 aa14.38□□□□□ -0.11
CUL3-216ENST00000617432 CREBZFQ9NS37 354 aa14.3□□□□□ -0.12
CUL3-216ENST00000617432 STAG3Q9UJ98 1225 aa14.29□□□□□ -0.12
CUL3-216ENST00000617432 GALR2O43603 387 aaPredicted RBP14.25□□□□□ -0.13
CUL3-216ENST00000617432 OTUD5Q96G74 571 aa14.23□□□□□ -0.13
CUL3-216ENST00000617432 PAK3O75914 559 aaPredicted RBP14.18□□□□□ -0.14
CUL3-216ENST00000617432 POTEB2H3BUK9 544 aa14.15□□□□□ -0.14
CUL3-216ENST00000617432 PHF12Q96QT6 1004 aa14.1□□□□□ -0.15
CUL3-216ENST00000617432 POTEMA6NI47 508 aa14.08□□□□□ -0.15
CUL3-216ENST00000617432 NPM1P06748 294 aaKnown RBP eCLIP14.07□□□□□ -0.16
CUL3-216ENST00000617432 POTEGQ6S5H5 508 aa14.03□□□□□ -0.16
CUL3-216ENST00000617432 PELP1Q8IZL8 1130 aaKnown RBP14.03□□□□□ -0.16
CUL3-216ENST00000617432 SPDYE4A6NLX3 237 aa14.01□□□□□ -0.17
CUL3-216ENST00000617432 CSRNP3Q8WYN3 585 aa14□□□□□ -0.17
CUL3-216ENST00000617432 MNX1P50219 401 aaPredicted RBP13.98□□□□□ -0.17
CUL3-216ENST00000617432 PCDH10Q9P2E7 1040 aa13.97□□□□□ -0.17
CUL3-216ENST00000617432 ASTLQ6HA08 431 aaPredicted RBP13.96□□□□□ -0.18
CUL3-216ENST00000617432 C7P10643 843 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms