Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC245052.7-201ENST00000601161 359 ntBASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 AL512782.1-201ENST00000603093 364 ntBASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 uc_338.31-201ENST00000615595 186 ntBASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 AC091925.1-201ENST00000623204 462 ntBASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 AC061999.1-201ENST00000624454 177 ntBASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
LIMD1Q9UGP4 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.15□□□□□ -1.27
LIMD1Q9UGP4 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 Y_RNA.187-201ENST00000363918 113 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RNA5SP512-201ENST00000364550 120 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RNU6-1207P-201ENST00000384343 107 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AL356057.3-201ENST00000402607 340 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AL590635.1-201ENST00000406314 586 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AL606923.1-201ENST00000406616 190 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 UBE2V1P13-201ENST00000436983 439 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PMS2P9-201ENST00000441237 515 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 ARL2BPP10-201ENST00000446487 531 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RPS4XP10-201ENST00000465034 731 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RN7SL216P-201ENST00000471607 298 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PABPC1P1-201ENST00000506347 591 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC021220.1-201ENST00000507445 630 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC017037.1-201ENST00000508460 471 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 HSD3BP3-201ENST00000514706 994 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RNU6-864P-201ENST00000516256 108 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 RNA5SP92-201ENST00000516437 110 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 SUMO2P20-201ENST00000520803 283 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC090615.1-201ENST00000577519 154 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC091768.1-201ENST00000609258 930 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC078880.4-201ENST00000617627 1749 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC007993.1-201ENST00000621298 2430 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AC011008.2-201ENST00000624866 3352 ntBASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 ATM-230ENST00000640388 578 ntTSL 5 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIMD1Q9UGP4 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
LIMD1Q9UGP4 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms