Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX9Q9Y5X1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
SNX9Q9Y5X1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.77■□□□□ 0.91
SNX9Q9Y5X1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.77■□□□□ 0.91
SNX9Q9Y5X1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SNX9Q9Y5X1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SNX9Q9Y5X1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 AL160286.2-201ENST00000567150 934 ntBASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 AC026271.3-201ENST00000571884 352 ntBASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.76■□□□□ 0.91
SNX9Q9Y5X1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 TREX1-205ENST00000625293 1783 ntBASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 AC116562.2-201ENST00000507042 360 ntBASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX9Q9Y5X1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 MIR6786-201ENST00000616843 113 ntBASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX9Q9Y5X1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 MESTP1-201ENST00000404287 994 ntBASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 B3GAT3P1-201ENST00000471720 806 ntBASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 AC011506.1-201ENST00000474329 610 ntBASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 FSCN1P1-201ENST00000568912 1481 ntBASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SNX9Q9Y5X1 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SNX9Q9Y5X1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX9Q9Y5X1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.72■□□□□ 0.91
SNX9Q9Y5X1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX9Q9Y5X1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
SNX9Q9Y5X1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SNX9Q9Y5X1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms