Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.26■□□□□ 0.67
VPS35Q96QK1 AC093827.2-201ENST00000512654 315 ntBASIC19.26■□□□□ 0.67
VPS35Q96QK1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS35Q96QK1 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
VPS35Q96QK1 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 AC113410.3-201ENST00000623366 203 ntBASIC19.25■□□□□ 0.67
VPS35Q96QK1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS35Q96QK1 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS35Q96QK1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.24■□□□□ 0.67
VPS35Q96QK1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS35Q96QK1 KRT16P1-201ENST00000399124 1418 ntBASIC19.24■□□□□ 0.67
VPS35Q96QK1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS35Q96QK1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS35Q96QK1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS35Q96QK1 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
VPS35Q96QK1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS35Q96QK1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS35Q96QK1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS35Q96QK1 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS35Q96QK1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms