Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS39Q96JC1 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS39Q96JC1 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS39Q96JC1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.41■□□□□ 0.7
VPS39Q96JC1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.41■□□□□ 0.7
VPS39Q96JC1 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS39Q96JC1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS39Q96JC1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS39Q96JC1 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 NCF1B-203ENST00000435988 1254 ntBASIC19.4■□□□□ 0.7
VPS39Q96JC1 RPS2P52-201ENST00000469610 820 ntBASIC19.4■□□□□ 0.7
VPS39Q96JC1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.4■□□□□ 0.7
VPS39Q96JC1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
VPS39Q96JC1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS39Q96JC1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS39Q96JC1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
VPS39Q96JC1 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.39■□□□□ 0.7
VPS39Q96JC1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.39■□□□□ 0.7
VPS39Q96JC1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS39Q96JC1 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS39Q96JC1 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 TSPY6P-201ENST00000448518 926 ntBASIC19.39■□□□□ 0.69
VPS39Q96JC1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 AC097658.1-201ENST00000475555 843 ntBASIC19.39■□□□□ 0.69
VPS39Q96JC1 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 ZNF815P-204ENST00000434898 1737 ntBASIC19.39■□□□□ 0.69
VPS39Q96JC1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS39Q96JC1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
VPS39Q96JC1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VPS39Q96JC1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VPS39Q96JC1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS39Q96JC1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS39Q96JC1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS39Q96JC1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms