Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 EMC1-208ENST00000480380 3892 ntTSL 27.96□□□□□ -1.142e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.422e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.422e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-208ENST00000535624 655 ntTSL 26.16□□□□□ -1.422e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.98□□□□□ -1.612e-12■■□□□ 12.1
DDX55Q8NHQ9 MGST1-211ENST00000538857 535 ntTSL 34.35□□□□□ -1.712e-12■■□□□ 12.1
DDX55Q8NHQ9 SLC25A39-211ENST00000588767 807 ntTSL 518.29■□□□□ 0.523e-6■■□□□ 12.1
DDX55Q8NHQ9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.342e-24■■□□□ 12.1
DDX55Q8NHQ9 BCAP31-206ENST00000442093 793 ntTSL 226.92■■□□□ 1.93e-6■■□□□ 12.1
DDX55Q8NHQ9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.88■■□□□ 1.892e-24■■□□□ 12.1
DDX55Q8NHQ9 BCAP31-204ENST00000429550 684 ntTSL 324.22■■□□□ 1.473e-6■■□□□ 12.1
DDX55Q8NHQ9 BCAP31-202ENST00000416815 688 ntTSL 523.37■■□□□ 1.333e-6■■□□□ 12.1
DDX55Q8NHQ9 BCAP31-203ENST00000423827 669 ntTSL 519.38■□□□□ 0.693e-6■■□□□ 12.1
DDX55Q8NHQ9 RNF31-203ENST00000491351 1804 ntTSL 527.95■■■□□ 2.072e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-219ENST00000559882 554 ntTSL 427.76■■■□□ 2.032e-8■■□□□ 12.1
DDX55Q8NHQ9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.982e-16■■□□□ 12.1
DDX55Q8NHQ9 RNF31-205ENST00000557991 578 ntTSL 425.41■■□□□ 1.662e-8■■□□□ 12.1
DDX55Q8NHQ9 ARL6IP4-213ENST00000536073 562 ntTSL 224.04■■□□□ 1.442e-8■■□□□ 12.1
DDX55Q8NHQ9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC23.31■■□□□ 1.322e-16■■□□□ 12.1
DDX55Q8NHQ9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC22.07■■□□□ 1.122e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-208ENST00000558907 777 ntTSL 320.25■□□□□ 0.832e-8■■□□□ 12.1
DDX55Q8NHQ9 MIER2-205ENST00000619835 1748 ntTSL 320.15■□□□□ 0.822e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-221ENST00000560342 888 ntTSL 220.09■□□□□ 0.812e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-207ENST00000558634 537 ntTSL 418.98■□□□□ 0.632e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-216ENST00000559533 889 ntTSL 418.39■□□□□ 0.532e-8■■□□□ 12.1
DDX55Q8NHQ9 UQCRC1-209ENST00000480561 1014 ntTSL 218.1■□□□□ 0.492e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.382e-8■■□□□ 12.1
DDX55Q8NHQ9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.372e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-204ENST00000557878 574 ntTSL 417.07■□□□□ 0.322e-8■■□□□ 12.1
DDX55Q8NHQ9 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.98■□□□□ 0.312e-8■■□□□ 12.1
DDX55Q8NHQ9 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.262e-8■■□□□ 12.1
DDX55Q8NHQ9 UQCRC1-207ENST00000471189 955 ntTSL 316.32■□□□□ 0.22e-8■■□□□ 12.1
DDX55Q8NHQ9 BAP1-203ENST00000466093 1127 ntTSL 516.28■□□□□ 0.22e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-213ENST00000559438 557 ntTSL 415.44■□□□□ 0.062e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-210ENST00000559260 551 ntTSL 514.71□□□□□ -0.052e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-212ENST00000559308 559 ntTSL 514.62□□□□□ -0.072e-8■■□□□ 12.1
DDX55Q8NHQ9 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.072e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-220ENST00000560071 576 ntTSL 514.49□□□□□ -0.092e-8■■□□□ 12.1
DDX55Q8NHQ9 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.172e-8■■□□□ 12.1
DDX55Q8NHQ9 SYDE1-203ENST00000600252 3832 ntTSL 2 BASIC13.93□□□□□ -0.182e-8■■□□□ 12.1
DDX55Q8NHQ9 RNF31-224ENST00000560787 2834 ntTSL 213.72□□□□□ -0.212e-8■■□□□ 12.1
DDX55Q8NHQ9 AC097637.1-202ENST00000478201 570 ntTSL 213.6□□□□□ -0.232e-16■■□□□ 12.1
DDX55Q8NHQ9 AC097637.1-201ENST00000494383 3695 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.522e-16■■□□□ 12.1
DDX55Q8NHQ9 RNF31-211ENST00000559275 3198 ntTSL 1 (best) BASIC10.97□□□□□ -0.652e-8■■□□□ 12.1
DDX55Q8NHQ9 CIZ1-217ENST00000476541 513 ntTSL 322.3■■□□□ 1.163e-14■■□□□ 12.1
DDX55Q8NHQ9 CIZ1-218ENST00000476727 1205 ntTSL 522.04■■□□□ 1.123e-14■■□□□ 12.1
DDX55Q8NHQ9 CIZ1-219ENST00000485001 596 ntTSL 314.58□□□□□ -0.083e-14■■□□□ 12.1
DDX55Q8NHQ9 CIZ1-213ENST00000471839 928 ntAPPRIS ALT2 TSL 212.95□□□□□ -0.343e-14■■□□□ 12.1
DDX55Q8NHQ9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.384e-9■■□□□ 12.1
DDX55Q8NHQ9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.69■■□□□ 1.064e-9■■□□□ 12.1
DDX55Q8NHQ9 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.076e-7■■□□□ 12.1
DDX55Q8NHQ9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC22.66■■□□□ 1.224e-7■■□□□ 12.1
DDX55Q8NHQ9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.75■■□□□ 1.074e-7■■□□□ 12.1
DDX55Q8NHQ9 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.064e-7■■□□□ 12.1
DDX55Q8NHQ9 SUMF2-209ENST00000436782 1683 ntTSL 1 (best)19.42■□□□□ 0.74e-7■■□□□ 12.1
DDX55Q8NHQ9 SUMF2-207ENST00000423763 1792 ntTSL 216.44■□□□□ 0.224e-7■■□□□ 12.1
DDX55Q8NHQ9 SUMF2-211ENST00000438133 1771 ntTSL 1 (best)15.14■□□□□ 0.014e-7■■□□□ 12.1
DDX55Q8NHQ9 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.63e-17■■□□□ 12.1
DDX55Q8NHQ9 GPX4-202ENST00000585362 859 ntTSL 232.24■■■□□ 2.751e-11■■□□□ 12.1
DDX55Q8NHQ9 GPX4-209ENST00000593032 583 ntTSL 322.09■■□□□ 1.131e-11■■□□□ 12.1
DDX55Q8NHQ9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.129e-7■■□□□ 12.1
DDX55Q8NHQ9 CHMP1A-204ENST00000547687 2007 ntTSL 1 (best)19.1■□□□□ 0.658e-7■■□□□ 12.1
DDX55Q8NHQ9 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.84■□□□□ 0.298e-7■■□□□ 12.1
DDX55Q8NHQ9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.268e-7■■□□□ 12.1
DDX55Q8NHQ9 TSPYL1-201ENST00000368608 3326 ntAPPRIS P1 BASIC12.25□□□□□ -0.453e-8■■□□□ 12.1
DDX55Q8NHQ9 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.055e-16■■□□□ 12.1
DDX55Q8NHQ9 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.015e-16■■□□□ 12.1
DDX55Q8NHQ9 MYADM-204ENST00000391770 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.025e-16■■□□□ 12.1
DDX55Q8NHQ9 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.155e-16■■□□□ 12.1
DDX55Q8NHQ9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.383e-10■■□□□ 12.1
DDX55Q8NHQ9 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC15.97■□□□□ 0.153e-10■■□□□ 12.1
DDX55Q8NHQ9 TFG-202ENST00000418917 1716 ntAPPRIS ALT1 TSL 3 BASIC15.09■□□□□ 0.013e-10■■□□□ 12.1
DDX55Q8NHQ9 TFG-204ENST00000476228 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.683e-10■■□□□ 12.1
DDX55Q8NHQ9 TFG-206ENST00000481203 3271 ntTSL 23.61□□□□□ -1.833e-10■■□□□ 12.1
DDX55Q8NHQ9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.582e-7■■□□□ 12.1
DDX55Q8NHQ9 MINK1-209ENST00000574453 4941 ntTSL 1 (best)17.48■□□□□ 0.392e-7■■□□□ 12.1
DDX55Q8NHQ9 MINK1-204ENST00000571207 4569 ntTSL 517.02■□□□□ 0.312e-7■■□□□ 12.1
DDX55Q8NHQ9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.232e-7■■□□□ 12.1
DDX55Q8NHQ9 MINK1-210ENST00000574871 3150 ntTSL 212.25□□□□□ -0.452e-7■■□□□ 12.1
DDX55Q8NHQ9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.3■■□□□ 1.321e-15■■□□□ 12.1
DDX55Q8NHQ9 RTN4-214ENST00000486085 955 ntTSL 37.77□□□□□ -1.172e-10■■□□□ 12.1
DDX55Q8NHQ9 RTN4-215ENST00000491592 860 ntTSL 25.23□□□□□ -1.571e-15■■□□□ 12.1
DDX55Q8NHQ9 RTN4-213ENST00000485749 832 ntTSL 24.77□□□□□ -1.651e-15■■□□□ 12.1
DDX55Q8NHQ9 RETREG2-201ENST00000273048 2533 ntTSL 1 (best)24.51■■□□□ 1.515e-7■■□□□ 12.1
DDX55Q8NHQ9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.895e-7■■□□□ 12.1
DDX55Q8NHQ9 RETREG2-202ENST00000420189 1781 ntTSL 1 (best)14.54□□□□□ -0.085e-7■■□□□ 12.1
DDX55Q8NHQ9 RPL11-203ENST00000458455 721 ntTSL 1 (best)15.05■□□□□ -05e-19■■□□□ 12.1
DDX55Q8NHQ9 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.655e-19■■□□□ 12.1
DDX55Q8NHQ9 RPL11-205ENST00000482370 879 ntTSL 1 (best)10.89□□□□□ -0.675e-19■■□□□ 12.1
DDX55Q8NHQ9 RPL11-202ENST00000443624 994 ntTSL 29.62□□□□□ -0.875e-19■■□□□ 12.1
DDX55Q8NHQ9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.382e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC15.41■□□□□ 0.062e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-209ENST00000638694 1614 ntTSL 514.78□□□□□ -0.042e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-205ENST00000638233 2046 ntTSL 1 (best)13.03□□□□□ -0.322e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-220ENST00000640505 1852 ntTSL 511.99□□□□□ -0.492e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-208ENST00000638661 1796 ntTSL 5 BASIC11.87□□□□□ -0.512e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-211ENST00000639318 2009 ntTSL 5 BASIC11.59□□□□□ -0.552e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-214ENST00000639461 2674 ntTSL 210.02□□□□□ -0.812e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-206ENST00000638274 878 ntTSL 59.77□□□□□ -0.852e-9■■□□□ 12.1
DDX55Q8NHQ9 GLDC-212ENST00000639364 3298 ntTSL 58.55□□□□□ -1.042e-9■■□□□ 12.1
Retrieved 100 of 15,504 protein–RNA pairs in 289.7 ms