Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 AC064862.7-201ENST00000604520 867 ntBASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC1BQ8NDV3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 BX842568.4-201ENST00000421222 227 ntBASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 AL353801.3-201ENST00000609898 542 ntBASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.02■■□□□ 1.28
SMC1BQ8NDV3 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 AC093525.10-201ENST00000625130 1569 ntBASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 AP001005.1-201ENST00000571755 1248 ntBASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 AL139424.1-201ENST00000607572 797 ntBASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.01■■□□□ 1.27
SMC1BQ8NDV3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SMC1BQ8NDV3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 SLC25A1P1-201ENST00000528351 927 ntBASIC23■■□□□ 1.27
SMC1BQ8NDV3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 AL160286.2-201ENST00000567150 934 ntBASIC23■■□□□ 1.27
SMC1BQ8NDV3 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
SMC1BQ8NDV3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 AL162741.1-201ENST00000565563 1558 ntBASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 PMS2P7-201ENST00000506558 1336 ntBASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SMC1BQ8NDV3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 COX10-202ENST00000429152 875 ntTSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 TOB2P1-201ENST00000469761 992 ntBASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC22.98■■□□□ 1.27
SMC1BQ8NDV3 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms