Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 AC006011.2-201ENST00000621313 1158 ntBASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HDDC3Q8N4P3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 BX664615.1-201ENST00000443558 458 ntBASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 ECEL1P2-202ENST00000465689 757 ntBASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HDDC3Q8N4P3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 AC099778.1-201ENST00000568593 1911 ntBASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HDDC3Q8N4P3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDDC3Q8N4P3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 INGX-201ENST00000359239 846 ntBASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 AC022616.7-201ENST00000525383 220 ntBASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDDC3Q8N4P3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms