Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDH1Q08174 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH1Q08174 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH1Q08174 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH1Q08174 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH1Q08174 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.7■□□□□ 0.58
PCDH1Q08174 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
PCDH1Q08174 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDH1Q08174 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
PCDH1Q08174 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH1Q08174 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH1Q08174 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PCDH1Q08174 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH1Q08174 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PCDH1Q08174 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH1Q08174 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PCDH1Q08174 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PCDH1Q08174 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH1Q08174 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH1Q08174 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH1Q08174 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH1Q08174 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDH1Q08174 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PCDH1Q08174 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PCDH1Q08174 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH1Q08174 NBPF21P-201ENST00000425093 1451 ntBASIC18.69■□□□□ 0.58
PCDH1Q08174 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH1Q08174 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH1Q08174 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH1Q08174 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH1Q08174 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
PCDH1Q08174 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PCDH1Q08174 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDH1Q08174 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PCDH1Q08174 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDH1Q08174 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.68■□□□□ 0.58
PCDH1Q08174 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PCDH1Q08174 AC018445.3-201ENST00000624177 1945 ntBASIC18.68■□□□□ 0.58
PCDH1Q08174 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PCDH1Q08174 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDH1Q08174 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
PCDH1Q08174 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PCDH1Q08174 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH1Q08174 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 AC141586.3-201ENST00000562166 1838 ntBASIC18.67■□□□□ 0.58
PCDH1Q08174 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PCDH1Q08174 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PCDH1Q08174 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.67■□□□□ 0.58
PCDH1Q08174 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.67■□□□□ 0.58
PCDH1Q08174 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.67■□□□□ 0.58
PCDH1Q08174 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH1Q08174 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH1Q08174 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 AC133681.1-201ENST00000465482 601 ntBASIC18.67■□□□□ 0.58
PCDH1Q08174 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.67■□□□□ 0.58
PCDH1Q08174 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH1Q08174 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PCDH1Q08174 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDH1Q08174 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDH1Q08174 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
PCDH1Q08174 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PCDH1Q08174 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PCDH1Q08174 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDH1Q08174 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
PCDH1Q08174 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 ESRRAP1-201ENST00000400596 1257 ntBASIC18.66■□□□□ 0.58
PCDH1Q08174 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms