Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLRN1P58418 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CLRN1P58418 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLRN1P58418 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CLRN1P58418 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 AC005332.7-201ENST00000614046 2005 ntBASIC17.32■□□□□ 0.36
CLRN1P58418 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.32■□□□□ 0.36
CLRN1P58418 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.32■□□□□ 0.36
CLRN1P58418 AC008403.3-201ENST00000598924 454 ntBASIC17.32■□□□□ 0.36
CLRN1P58418 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.32■□□□□ 0.36
CLRN1P58418 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.32■□□□□ 0.36
CLRN1P58418 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLRN1P58418 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CLRN1P58418 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.31■□□□□ 0.36
CLRN1P58418 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 TUBB8P6-201ENST00000436895 1288 ntBASIC17.31■□□□□ 0.36
CLRN1P58418 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.31■□□□□ 0.36
CLRN1P58418 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CLRN1P58418 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.31■□□□□ 0.36
CLRN1P58418 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.31■□□□□ 0.36
CLRN1P58418 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
CLRN1P58418 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLRN1P58418 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
CLRN1P58418 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CLRN1P58418 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CLRN1P58418 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLRN1P58418 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 KRT8P8-201ENST00000434750 1448 ntBASIC17.3■□□□□ 0.36
CLRN1P58418 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLRN1P58418 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLRN1P58418 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.3■□□□□ 0.36
CLRN1P58418 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.3■□□□□ 0.36
CLRN1P58418 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.3■□□□□ 0.36
CLRN1P58418 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLRN1P58418 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.29■□□□□ 0.36
CLRN1P58418 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.29■□□□□ 0.36
CLRN1P58418 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.29■□□□□ 0.36
CLRN1P58418 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 AC069544.1-201ENST00000609399 999 ntBASIC17.29■□□□□ 0.36
CLRN1P58418 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CLRN1P58418 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLRN1P58418 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms