Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.2■□□□□ 0.5
RFX3P48380 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RFX3P48380 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RFX3P48380 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.19■□□□□ 0.5
RFX3P48380 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 ESRRAP1-201ENST00000400596 1257 ntBASIC18.19■□□□□ 0.5
RFX3P48380 POM121L13P-201ENST00000422362 380 ntBASIC18.19■□□□□ 0.5
RFX3P48380 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RFX3P48380 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.19■□□□□ 0.5
RFX3P48380 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
RFX3P48380 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 AC087289.5-201ENST00000586076 3175 ntBASIC18.19■□□□□ 0.5
RFX3P48380 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RFX3P48380 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
RFX3P48380 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 TFP1-202ENST00000475455 1573 ntBASIC18.18■□□□□ 0.5
RFX3P48380 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
RFX3P48380 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.18■□□□□ 0.5
RFX3P48380 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.18■□□□□ 0.5
RFX3P48380 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.18■□□□□ 0.5
RFX3P48380 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
RFX3P48380 AC026366.1-201ENST00000488803 879 ntBASIC18.18■□□□□ 0.5
RFX3P48380 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.18■□□□□ 0.5
RFX3P48380 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.18■□□□□ 0.5
RFX3P48380 MIR4651-201ENST00000582622 73 ntBASIC18.18■□□□□ 0.5
RFX3P48380 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 AC008403.3-201ENST00000598924 454 ntBASIC18.18■□□□□ 0.5
RFX3P48380 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.18■□□□□ 0.5
RFX3P48380 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RFX3P48380 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
RFX3P48380 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.18■□□□□ 0.5
RFX3P48380 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RFX3P48380 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.17■□□□□ 0.5
RFX3P48380 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RFX3P48380 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 KRT17P3-201ENST00000420566 1262 ntBASIC18.17■□□□□ 0.5
RFX3P48380 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.17■□□□□ 0.5
RFX3P48380 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.17■□□□□ 0.5
RFX3P48380 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.17■□□□□ 0.5
RFX3P48380 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.17■□□□□ 0.5
RFX3P48380 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 AP006587.1-201ENST00000534129 1502 ntBASIC18.17■□□□□ 0.5
RFX3P48380 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
RFX3P48380 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RFX3P48380 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
RFX3P48380 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RFX3P48380 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RFX3P48380 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RFX3P48380 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
RFX3P48380 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms