Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
COL4A2P08572 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A2P08572 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL4A2P08572 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL4A2P08572 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL4A2P08572 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
COL4A2P08572 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A2P08572 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A2P08572 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A2P08572 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A2P08572 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A2P08572 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
COL4A2P08572 TPM4P1-201ENST00000436100 807 ntBASIC19.61■□□□□ 0.73
COL4A2P08572 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A2P08572 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A2P08572 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL4A2P08572 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A2P08572 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.6■□□□□ 0.73
COL4A2P08572 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A2P08572 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A2P08572 LINC01311-201ENST00000565162 1445 ntBASIC19.6■□□□□ 0.73
COL4A2P08572 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.6■□□□□ 0.73
COL4A2P08572 CR769767.2-201ENST00000622735 460 ntBASIC19.6■□□□□ 0.73
COL4A2P08572 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A2P08572 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
COL4A2P08572 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL4A2P08572 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL4A2P08572 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A2P08572 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 AL645929.1-201ENST00000420084 975 ntBASIC19.59■□□□□ 0.73
COL4A2P08572 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A2P08572 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.59■□□□□ 0.73
COL4A2P08572 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A2P08572 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A2P08572 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A2P08572 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A2P08572 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A2P08572 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A2P08572 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.59■□□□□ 0.73
COL4A2P08572 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A2P08572 AC036111.1-201ENST00000533973 1582 ntBASIC19.58■□□□□ 0.73
COL4A2P08572 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.58■□□□□ 0.73
COL4A2P08572 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A2P08572 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A2P08572 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
COL4A2P08572 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.58■□□□□ 0.72
COL4A2P08572 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A2P08572 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A2P08572 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A2P08572 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL4A2P08572 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL4A2P08572 AL691432.2-201ENST00000607222 2038 ntBASIC19.57■□□□□ 0.72
COL4A2P08572 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A2P08572 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A2P08572 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A2P08572 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A2P08572 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A2P08572 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A2P08572 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A2P08572 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A2P08572 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A2P08572 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A2P08572 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL4A2P08572 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A2P08572 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A2P08572 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A2P08572 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A2P08572 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A2P08572 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A2P08572 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A2P08572 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms