Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 INGX-201ENST00000359239 846 ntBASIC25.72■■□□□ 1.71
COL3A1P02461 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
COL3A1P02461 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
COL3A1P02461 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC25.72■■□□□ 1.71
COL3A1P02461 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC25.72■■□□□ 1.71
COL3A1P02461 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
COL3A1P02461 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 AL158211.5-201ENST00000623583 2518 ntBASIC25.72■■□□□ 1.71
COL3A1P02461 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.72■■□□□ 1.71
COL3A1P02461 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL3A1P02461 CKBP1-201ENST00000565489 1086 ntBASIC25.72■■□□□ 1.71
COL3A1P02461 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC25.71■■□□□ 1.71
COL3A1P02461 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
COL3A1P02461 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.71■■□□□ 1.71
COL3A1P02461 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC25.71■■□□□ 1.71
COL3A1P02461 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC25.71■■□□□ 1.71
COL3A1P02461 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC25.71■■□□□ 1.71
COL3A1P02461 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.71■■□□□ 1.71
COL3A1P02461 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.71■■□□□ 1.71
COL3A1P02461 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.71■■□□□ 1.71
COL3A1P02461 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC25.71■■□□□ 1.71
COL3A1P02461 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC25.71■■□□□ 1.71
COL3A1P02461 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC25.71■■□□□ 1.71
COL3A1P02461 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.71■■□□□ 1.71
COL3A1P02461 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL3A1P02461 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC25.7■■□□□ 1.71
COL3A1P02461 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
COL3A1P02461 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
COL3A1P02461 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
COL3A1P02461 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
COL3A1P02461 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL3A1P02461 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL3A1P02461 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
COL3A1P02461 TSPY14P-201ENST00000303979 915 ntBASIC25.7■■□□□ 1.7
COL3A1P02461 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
COL3A1P02461 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL3A1P02461 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL3A1P02461 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL3A1P02461 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
COL3A1P02461 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
COL3A1P02461 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC25.69■■□□□ 1.7
COL3A1P02461 CRYGFP-201ENST00000418459 633 ntBASIC25.69■■□□□ 1.7
COL3A1P02461 SLC25A1P4-201ENST00000567977 778 ntBASIC25.69■■□□□ 1.7
COL3A1P02461 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL3A1P02461 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
COL3A1P02461 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL3A1P02461 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC25.69■■□□□ 1.7
COL3A1P02461 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL3A1P02461 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
COL3A1P02461 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC25.68■■□□□ 1.7
COL3A1P02461 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL3A1P02461 AFG3L1P-217ENST00000557444 2447 ntBASIC25.68■■□□□ 1.7
COL3A1P02461 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC25.68■■□□□ 1.7
COL3A1P02461 NAPSB-206ENST00000562112 1266 ntBASIC25.68■■□□□ 1.7
COL3A1P02461 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.68■■□□□ 1.7
COL3A1P02461 FAM87A-204ENST00000613235 858 ntBASIC25.68■■□□□ 1.7
COL3A1P02461 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
COL3A1P02461 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL3A1P02461 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL3A1P02461 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL3A1P02461 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
COL3A1P02461 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL3A1P02461 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC25.67■■□□□ 1.7
COL3A1P02461 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC25.67■■□□□ 1.7
COL3A1P02461 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
COL3A1P02461 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC25.67■■□□□ 1.7
COL3A1P02461 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL3A1P02461 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL3A1P02461 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC25.67■■□□□ 1.7
COL3A1P02461 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC25.67■■□□□ 1.7
COL3A1P02461 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.67■■□□□ 1.7
COL3A1P02461 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC25.66■■□□□ 1.7
COL3A1P02461 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC25.66■■□□□ 1.7
COL3A1P02461 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL3A1P02461 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC25.66■■□□□ 1.7
COL3A1P02461 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC25.66■■□□□ 1.7
COL3A1P02461 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
COL3A1P02461 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms