Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
ABCA1O95477 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA1O95477 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
ABCA1O95477 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.24■□□□□ 0.19
ABCA1O95477 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA1O95477 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA1O95477 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA1O95477 AC112907.3-201ENST00000577781 2400 ntBASIC16.24■□□□□ 0.19
ABCA1O95477 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA1O95477 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ABCA1O95477 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.24■□□□□ 0.19
ABCA1O95477 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
ABCA1O95477 AP006587.1-201ENST00000534129 1502 ntBASIC16.24■□□□□ 0.19
ABCA1O95477 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.24■□□□□ 0.19
ABCA1O95477 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ABCA1O95477 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA1O95477 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA1O95477 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.23■□□□□ 0.19
ABCA1O95477 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA1O95477 TPM4P1-201ENST00000436100 807 ntBASIC16.23■□□□□ 0.19
ABCA1O95477 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.23■□□□□ 0.19
ABCA1O95477 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA1O95477 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.23■□□□□ 0.19
ABCA1O95477 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.23■□□□□ 0.19
ABCA1O95477 FP700111.2-201ENST00000619190 1892 ntBASIC16.23■□□□□ 0.19
ABCA1O95477 KRT8P20-201ENST00000423953 1409 ntBASIC16.23■□□□□ 0.19
ABCA1O95477 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ABCA1O95477 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.22■□□□□ 0.19
ABCA1O95477 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
ABCA1O95477 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA1O95477 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.22■□□□□ 0.19
ABCA1O95477 AP005212.1-201ENST00000581547 1997 ntBASIC16.22■□□□□ 0.19
ABCA1O95477 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
ABCA1O95477 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA1O95477 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.22■□□□□ 0.19
ABCA1O95477 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.22■□□□□ 0.19
ABCA1O95477 AL138966.2-201ENST00000621997 464 ntBASIC16.22■□□□□ 0.19
ABCA1O95477 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ABCA1O95477 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ABCA1O95477 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.21■□□□□ 0.19
ABCA1O95477 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 YBX1P10-201ENST00000444752 975 ntBASIC16.21■□□□□ 0.19
ABCA1O95477 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA1O95477 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA1O95477 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.21■□□□□ 0.19
ABCA1O95477 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
ABCA1O95477 KRT18P48-201ENST00000434763 852 ntBASIC16.21■□□□□ 0.19
ABCA1O95477 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA1O95477 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.21■□□□□ 0.19
ABCA1O95477 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.21■□□□□ 0.19
ABCA1O95477 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.21■□□□□ 0.19
ABCA1O95477 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ABCA1O95477 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.21■□□□□ 0.18
ABCA1O95477 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ABCA1O95477 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 AC096733.2-201ENST00000609937 1394 ntBASIC16.2■□□□□ 0.18
ABCA1O95477 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.2■□□□□ 0.18
ABCA1O95477 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.2■□□□□ 0.18
ABCA1O95477 FAM207BP-201ENST00000447172 505 ntBASIC16.2■□□□□ 0.18
ABCA1O95477 SLC25A1P4-201ENST00000567977 778 ntBASIC16.2■□□□□ 0.18
ABCA1O95477 AP000692.2-201ENST00000608391 879 ntBASIC16.2■□□□□ 0.18
ABCA1O95477 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.2■□□□□ 0.18
ABCA1O95477 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ABCA1O95477 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms