Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HOXC11O43248 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HOXC11O43248 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HOXC11O43248 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.76■□□□□ 0.75
HOXC11O43248 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
HOXC11O43248 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HOXC11O43248 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
HOXC11O43248 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.76■□□□□ 0.75
HOXC11O43248 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXC11O43248 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.76■□□□□ 0.75
HOXC11O43248 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 AL353719.1-201ENST00000566847 864 ntBASIC19.76■□□□□ 0.75
HOXC11O43248 AL138966.2-201ENST00000621997 464 ntBASIC19.76■□□□□ 0.75
HOXC11O43248 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXC11O43248 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HOXC11O43248 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXC11O43248 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXC11O43248 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXC11O43248 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXC11O43248 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HOXC11O43248 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
HOXC11O43248 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXC11O43248 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXC11O43248 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
HOXC11O43248 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HOXC11O43248 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXC11O43248 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC11O43248 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC11O43248 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.74■□□□□ 0.75
HOXC11O43248 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXC11O43248 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
HOXC11O43248 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXC11O43248 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HOXC11O43248 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC11O43248 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC11O43248 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXC11O43248 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXC11O43248 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXC11O43248 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.73■□□□□ 0.75
HOXC11O43248 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 PRSS44-201ENST00000515154 1146 ntBASIC19.73■□□□□ 0.75
HOXC11O43248 NTF6B-201ENST00000591913 560 ntBASIC19.73■□□□□ 0.75
HOXC11O43248 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC11O43248 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC11O43248 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC11O43248 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC11O43248 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC11O43248 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
HOXC11O43248 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC11O43248 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.72■□□□□ 0.75
HOXC11O43248 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXC11O43248 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC11O43248 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC11O43248 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC11O43248 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms