Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LSM12P1-201ENST00000411836 588 ntBASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM49D1C9J1S8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TRIM49D1C9J1S8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 AC104581.1-202ENST00000635932 2618 ntBASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM49D1C9J1S8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 AC005181.1-201ENST00000604782 1256 ntBASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM49D1C9J1S8 AC007613.1-201ENST00000572811 2597 ntBASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.39■□□□□ 0.7
TRIM49D1C9J1S8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM49D1C9J1S8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms