Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 OR10J6P-201ENST00000289731 930 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 METTL21EP-201ENST00000298105 713 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 RNU5B-4P-201ENST00000363508 111 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 SNORA62.2-201ENST00000364672 152 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC019155.1-201ENST00000382242 574 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.04□□□□□ -1.6
HDAC4P56524 CKS1BP6-201ENST00000424932 240 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 RPS26P47-201ENST00000427219 348 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC093422.3-201ENST00000428506 305 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.04□□□□□ -1.6
HDAC4P56524 PRPF38AP2-201ENST00000438179 851 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 MED6P1-201ENST00000439659 713 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 SLC25A18P1-201ENST00000449385 454 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 RHEBP2-201ENST00000450289 600 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.04□□□□□ -1.6
HDAC4P56524 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 RPL35AP28-201ENST00000459730 331 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 AC008427.1-201ENST00000503102 655 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC5.04□□□□□ -1.6
HDAC4P56524 AC134698.5-201ENST00000519444 336 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC010376.1-201ENST00000522101 334 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.04□□□□□ -1.6
HDAC4P56524 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.04□□□□□ -1.6
HDAC4P56524 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.04□□□□□ -1.6
HDAC4P56524 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 MTND1P24-201ENST00000552175 861 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC093249.4-201ENST00000564755 259 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.04□□□□□ -1.6
HDAC4P56524 RN7SL622P-201ENST00000585292 275 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 ELOCP28-201ENST00000590044 317 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC011487.3-201ENST00000593607 453 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 PSMA6P4-201ENST00000603247 718 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AL121932.1-201ENST00000605542 214 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC063944.3-201ENST00000609969 533 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC139769.3-201ENST00000618383 175 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.04□□□□□ -1.6
HDAC4P56524 AL132640.2-201ENST00000559968 1698 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC018529.3-201ENST00000624212 2254 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.04□□□□□ -1.6
HDAC4P56524 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HDAC4P56524 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
HDAC4P56524 AC017007.4-201ENST00000503353 1352 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 AC096656.1-201ENST00000623826 1364 ntBASIC5.04□□□□□ -1.6
HDAC4P56524 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HDAC4P56524 DDX18P5-201ENST00000534547 1306 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AL133243.3-201ENST00000617415 3004 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.03□□□□□ -1.6
HDAC4P56524 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.03□□□□□ -1.6
HDAC4P56524 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDAC4P56524 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDAC4P56524 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HDAC4P56524 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HDAC4P56524 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HDAC4P56524 SNORA56-201ENST00000383966 129 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 RNU6-298P-201ENST00000390888 96 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 U3.30-201ENST00000391308 210 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 U3.35-201ENST00000408405 208 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AP000357.1-201ENST00000409926 1165 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 EIF4HP2-201ENST00000424380 563 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 RPS17P8-201ENST00000434525 335 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.03□□□□□ -1.6
HDAC4P56524 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC5.03□□□□□ -1.6
HDAC4P56524 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.03□□□□□ -1.6
HDAC4P56524 AL096803.2-201ENST00000450032 677 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AL009048.1-201ENST00000450437 298 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
HDAC4P56524 OFD1P3Y-201ENST00000453312 783 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AC005229.2-201ENST00000456995 399 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.03□□□□□ -1.6
HDAC4P56524 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.03□□□□□ -1.6
HDAC4P56524 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.03□□□□□ -1.6
HDAC4P56524 RNU6-347P-201ENST00000516658 105 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.03□□□□□ -1.6
HDAC4P56524 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.03□□□□□ -1.6
HDAC4P56524 IGKV2D-10-201ENST00000520194 281 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AC021451.1-201ENST00000523498 1129 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.03□□□□□ -1.6
HDAC4P56524 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HDAC4P56524 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.03□□□□□ -1.6
HDAC4P56524 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.03□□□□□ -1.6
HDAC4P56524 RN7SL176P-201ENST00000580352 264 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AP001160.4-201ENST00000596971 382 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.03□□□□□ -1.6
HDAC4P56524 AC099785.1-201ENST00000605697 437 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 OR2BH1P-201ENST00000608850 864 ntBASIC5.03□□□□□ -1.6
HDAC4P56524 MIR6810-201ENST00000622701 70 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms