Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USH2AO75445 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
USH2AO75445 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USH2AO75445 LCMT1-AS2-202ENST00000565214 5666 ntBASIC1.82□□□□□ -2.12
USH2AO75445 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
USH2AO75445 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC1.82□□□□□ -2.12
USH2AO75445 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC1.82□□□□□ -2.12
USH2AO75445 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC1.82□□□□□ -2.12
USH2AO75445 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
USH2AO75445 OR10J6P-201ENST00000289731 930 ntBASIC1.82□□□□□ -2.12
USH2AO75445 ARF4P3-201ENST00000397387 509 ntBASIC1.82□□□□□ -2.12
USH2AO75445 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC1.82□□□□□ -2.12
USH2AO75445 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC1.82□□□□□ -2.12
USH2AO75445 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC1.82□□□□□ -2.12
USH2AO75445 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC1.82□□□□□ -2.12
USH2AO75445 RPL23AP81-201ENST00000455252 467 ntBASIC1.82□□□□□ -2.12
USH2AO75445 AC093166.2-201ENST00000455969 1017 ntBASIC1.82□□□□□ -2.12
USH2AO75445 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC1.82□□□□□ -2.12
USH2AO75445 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC1.82□□□□□ -2.12
USH2AO75445 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC1.82□□□□□ -2.12
USH2AO75445 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC1.82□□□□□ -2.12
USH2AO75445 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
USH2AO75445 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
USH2AO75445 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 DNAH14-211ENST00000445597 10524 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC1.81□□□□□ -2.12
USH2AO75445 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC1.81□□□□□ -2.12
USH2AO75445 AC097713.2-201ENST00000430199 356 ntBASIC1.81□□□□□ -2.12
USH2AO75445 UBE2V1P1-201ENST00000430836 445 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC1.81□□□□□ -2.12
USH2AO75445 Z75741.1-201ENST00000446793 314 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AP001992.1-205ENST00000462248 379 ntBASIC1.81□□□□□ -2.12
USH2AO75445 RN7SL812P-201ENST00000493791 279 ntBASIC1.81□□□□□ -2.12
USH2AO75445 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC133552.5-201ENST00000604266 540 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AL163642.2-201ENST00000604722 1019 ntBASIC1.81□□□□□ -2.12
USH2AO75445 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 NHS-204ENST00000615422 8860 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
USH2AO75445 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC1.81□□□□□ -2.12
USH2AO75445 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 REREP1Y-201ENST00000422655 198 ntBASIC1.81□□□□□ -2.12
USH2AO75445 REREP2Y-201ENST00000439103 200 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC1.81□□□□□ -2.12
USH2AO75445 AL160290.3-201ENST00000604869 165 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC1.81□□□□□ -2.12
USH2AO75445 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 AC009313.2-201ENST00000417893 1941 ntBASIC1.81□□□□□ -2.12
USH2AO75445 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 RPL23AP57-201ENST00000332361 466 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC1.81□□□□□ -2.12
USH2AO75445 AC136777.2-201ENST00000522979 358 ntBASIC1.81□□□□□ -2.12
USH2AO75445 MIR4524B-201ENST00000581569 115 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC002069.2-201ENST00000603580 883 ntBASIC1.81□□□□□ -2.12
USH2AO75445 OR2AS2P-201ENST00000606902 342 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC016957.2-201ENST00000616998 848 ntBASIC1.81□□□□□ -2.12
USH2AO75445 FP325313.1-201ENST00000638228 703 ntBASIC1.81□□□□□ -2.12
USH2AO75445 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC1.81□□□□□ -2.12
USH2AO75445 RASGRF2-201ENST00000265080 8167 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 Y_RNA.40-201ENST00000362645 93 ntBASIC1.81□□□□□ -2.12
USH2AO75445 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC1.81□□□□□ -2.12
USH2AO75445 COX5BP7-201ENST00000414780 274 ntBASIC1.81□□□□□ -2.12
USH2AO75445 AC013429.2-201ENST00000418798 781 ntBASIC1.81□□□□□ -2.12
USH2AO75445 RPL7P59-201ENST00000447700 943 ntBASIC1.81□□□□□ -2.12
USH2AO75445 SLC31A1P1-201ENST00000451221 567 ntBASIC1.81□□□□□ -2.12
USH2AO75445 RN7SL504P-201ENST00000494496 287 ntBASIC1.81□□□□□ -2.12
USH2AO75445 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
USH2AO75445 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC1.81□□□□□ -2.12
USH2AO75445 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 CDH8-203ENST00000577390 9721 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC1.81□□□□□ -2.12
USH2AO75445 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
USH2AO75445 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
USH2AO75445 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC1.8□□□□□ -2.12
USH2AO75445 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
USH2AO75445 CYCSP4-201ENST00000429682 331 ntBASIC1.8□□□□□ -2.12
USH2AO75445 AC004938.1-201ENST00000438468 308 ntBASIC1.8□□□□□ -2.12
USH2AO75445 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC1.8□□□□□ -2.12
USH2AO75445 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC1.8□□□□□ -2.12
USH2AO75445 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms