RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 MYT1Q01538 1121 aa12.2□□□□□ -0.46
PDGFRA-201ENST00000257290 PELP1Q8IZL8 1130 aaKnown RBP12.08□□□□□ -0.47
PDGFRA-201ENST00000257290 NISCHQ9Y2I1 1504 aa11.58□□□□□ -0.56
PDGFRA-201ENST00000257290 TTBK1Q5TCY1 1321 aaPredicted RBP11.45□□□□□ -0.58
PDGFRA-201ENST00000257290 ERICH6Q7L0X2 663 aa11.27□□□□□ -0.61
PDGFRA-201ENST00000257290 SLC24A1O60721 1099 aa10.84□□□□□ -0.67
PDGFRA-201ENST00000257290 CENPBP07199 599 aaPredicted RBP10.71□□□□□ -0.7
PDGFRA-201ENST00000257290 DCAF8L2P0C7V8 631 aa10.7□□□□□ -0.7
PDGFRA-201ENST00000257290 RANGAP1P46060 587 aaPredicted RBP10.45□□□□□ -0.74
PDGFRA-201ENST00000257290 CCER1Q8TC90 406 aaPredicted RBP10.38□□□□□ -0.75
PDGFRA-201ENST00000257290 PRKCSHP14314 528 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-201ENST00000257290 BCL11AQ9H165 835 aa10.35□□□□□ -0.75
PDGFRA-201ENST00000257290 HRCP23327 699 aa10.34□□□□□ -0.75
PDGFRA-201ENST00000257290 EIF5BO60841 1220 aaKnown RBP10.33□□□□□ -0.76
PDGFRA-201ENST00000257290 YTHDC1Q96MU7 727 aaKnown RBP10.25□□□□□ -0.77
PDGFRA-201ENST00000257290 SHROOM4Q9ULL8 1493 aa10.24□□□□□ -0.77
PDGFRA-201ENST00000257290 ZEB1P37275 1124 aaPredicted RBP10.24□□□□□ -0.77
PDGFRA-201ENST00000257290 DAXXQ9UER7 740 aaPredicted RBP10.2□□□□□ -0.78
PDGFRA-201ENST00000257290 GLIPR1L2Q4G1C9 344 aa10.2□□□□□ -0.78
PDGFRA-201ENST00000257290 SUPT5HO00267 1087 aaKnown RBP10.17□□□□□ -0.78
PDGFRA-201ENST00000257290 PCGF6Q9BYE7 350 aa10.11□□□□□ -0.79
PDGFRA-201ENST00000257290 APLP2Q06481 763 aa10.03□□□□□ -0.8
PDGFRA-201ENST00000257290 MYT1LQ9UL68 1186 aa10.01□□□□□ -0.81
PDGFRA-201ENST00000257290 GTF3C3Q9Y5Q9 886 aa10.01□□□□□ -0.81
PDGFRA-201ENST00000257290 NEFLP07196 543 aa9.96□□□□□ -0.81
PDGFRA-201ENST00000257290 ANP32EQ9BTT0 268 aa9.96□□□□□ -0.82
PDGFRA-201ENST00000257290 SCAF1Q9H7N4 1312 aaKnown RBP9.95□□□□□ -0.82
PDGFRA-201ENST00000257290 RTL5Q5HYW3 569 aaPredicted RBP9.94□□□□□ -0.82
PDGFRA-201ENST00000257290 ACIN1Q9UKV3 1341 aaKnown RBP9.93□□□□□ -0.82
PDGFRA-201ENST00000257290 PPARGC1BQ86YN6 1023 aaKnown RBP9.88□□□□□ -0.83
PDGFRA-201ENST00000257290 PODXL2Q9NZ53 605 aa9.88□□□□□ -0.83
PDGFRA-201ENST00000257290 FAM9AQ8IZU1 332 aaPredicted RBP9.87□□□□□ -0.83
PDGFRA-201ENST00000257290 CCDC180Q9P1Z9 1646 aa9.85□□□□□ -0.83
PDGFRA-201ENST00000257290 CLSPNQ9HAW4 1339 aa9.84□□□□□ -0.83
PDGFRA-201ENST00000257290 EHMT2Q96KQ7 1210 aa9.76□□□□□ -0.85
PDGFRA-201ENST00000257290 PKNOX2Q96KN3 472 aa9.71□□□□□ -0.85
PDGFRA-201ENST00000257290 ABCC9O60706 1549 aa9.71□□□□□ -0.86
PDGFRA-201ENST00000257290 ZCCHC6Q5VYS8 1495 aaKnown RBP9.67□□□□□ -0.86
PDGFRA-201ENST00000257290 ERICH6BQ5W0A0 696 aa9.62□□□□□ -0.87
PDGFRA-201ENST00000257290 POLR3GLQ9BT43 218 aa9.62□□□□□ -0.87
PDGFRA-201ENST00000257290 ZNF316A6NFI3 1004 aaPredicted RBP9.6□□□□□ -0.87
PDGFRA-201ENST00000257290 ZNF326Q5BKZ1 582 aaKnown RBP9.6□□□□□ -0.87
PDGFRA-201ENST00000257290 NEUROD1Q13562 356 aa9.59□□□□□ -0.87
PDGFRA-201ENST00000257290 CSRNP3Q8WYN3 585 aa9.58□□□□□ -0.88
PDGFRA-201ENST00000257290 DIEXFQ68CQ4 756 aaKnown RBP9.58□□□□□ -0.88
PDGFRA-201ENST00000257290 TRIM41Q8WV44 630 aa9.56□□□□□ -0.88
PDGFRA-201ENST00000257290 TRIM26Q12899 539 aaPredicted RBP9.55□□□□□ -0.88
PDGFRA-201ENST00000257290 UBE2Q2Q8WVN8 375 aa9.54□□□□□ -0.88
PDGFRA-201ENST00000257290 PDE4CQ08493 712 aa9.51□□□□□ -0.89
PDGFRA-201ENST00000257290 NCLP19338 710 aaKnown RBP9.5□□□□□ -0.89
PDGFRA-201ENST00000257290 A0A0U1RQG5 324 aaPredicted RBP9.49□□□□□ -0.89
PDGFRA-201ENST00000257290 CDK11AQ9UQ88 783 aaPredicted RBP9.48□□□□□ -0.89
PDGFRA-201ENST00000257290 ANO8Q9HCE9 1232 aaPredicted RBP9.47□□□□□ -0.89
PDGFRA-201ENST00000257290 CCDC136Q96JN2 1154 aa9.46□□□□□ -0.89
PDGFRA-201ENST00000257290 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.46□□□□□ -0.89
PDGFRA-201ENST00000257290 NCBP3Q53F19 620 aaKnown RBP9.45□□□□□ -0.9
PDGFRA-201ENST00000257290 TNNT2P45379 298 aaPredicted RBP9.45□□□□□ -0.9
PDGFRA-201ENST00000257290 PLEKHG5O94827 1062 aa9.44□□□□□ -0.9
PDGFRA-201ENST00000257290 HOMEZQ8IX15 550 aa9.44□□□□□ -0.9
PDGFRA-201ENST00000257290 DEKP35659 375 aaKnown RBP9.43□□□□□ -0.9
PDGFRA-201ENST00000257290 SCRIBQ14160 1630 aa9.43□□□□□ -0.9
PDGFRA-201ENST00000257290 VSIG10Q8N0Z9 540 aa9.43□□□□□ -0.9
PDGFRA-201ENST00000257290 ARXQ96QS3 562 aa9.43□□□□□ -0.9
PDGFRA-201ENST00000257290 CDK11BP21127 795 aaKnown RBP9.42□□□□□ -0.9
PDGFRA-201ENST00000257290 RTN4Q9NQC3 1192 aaKnown RBP9.42□□□□□ -0.9
PDGFRA-201ENST00000257290 DCAF1Q9Y4B6 1507 aa9.4□□□□□ -0.9
PDGFRA-201ENST00000257290 PDIA4P13667 645 aaKnown RBP9.4□□□□□ -0.9
PDGFRA-201ENST00000257290 RB1CC1Q8TDY2 1594 aa9.4□□□□□ -0.9
PDGFRA-201ENST00000257290 BCANQ96GW7 911 aa9.39□□□□□ -0.91
PDGFRA-201ENST00000257290 NACADO15069 1562 aa9.39□□□□□ -0.91
PDGFRA-201ENST00000257290 PABPN1Q86U42 306 aaKnown RBP eCLIP9.38□□□□□ -0.91
PDGFRA-201ENST00000257290 NBR1Q14596 966 aa9.36□□□□□ -0.91
PDGFRA-201ENST00000257290 ANP32AP39687 249 aaKnown RBP9.35□□□□□ -0.91
PDGFRA-201ENST00000257290 CHIC1Q5VXU3 224 aa9.35□□□□□ -0.91
PDGFRA-201ENST00000257290 NAP1L5Q96NT1 182 aaPredicted RBP9.33□□□□□ -0.92
PDGFRA-201ENST00000257290 HAP1P54257 671 aaPredicted RBP9.33□□□□□ -0.92
PDGFRA-201ENST00000257290 C14orf37Q86TY3 774 aa9.33□□□□□ -0.92
PDGFRA-201ENST00000257290 TULP1O00294 542 aaPredicted RBP9.32□□□□□ -0.92
PDGFRA-201ENST00000257290 UBTFP17480 764 aaKnown RBP9.3□□□□□ -0.92
PDGFRA-201ENST00000257290 RSPH6AQ9H0K4 717 aa9.3□□□□□ -0.92
PDGFRA-201ENST00000257290 CNGB1Q14028 1251 aaPredicted RBP9.3□□□□□ -0.92
PDGFRA-201ENST00000257290 TRIM44Q96DX7 344 aaPredicted RBP9.28□□□□□ -0.92
PDGFRA-201ENST00000257290 PTMSP20962 102 aa9.28□□□□□ -0.92
PDGFRA-201ENST00000257290 TAF7LQ5H9L4 462 aa9.28□□□□□ -0.92
PDGFRA-201ENST00000257290 NPM2Q86SE8 214 aaKnown RBP9.27□□□□□ -0.93
PDGFRA-201ENST00000257290 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
PDGFRA-201ENST00000257290 HSP90AA1P07900 732 aaKnown RBP9.26□□□□□ -0.93
PDGFRA-201ENST00000257290 NEFMP07197 916 aa9.24□□□□□ -0.93
PDGFRA-201ENST00000257290 HSP90AA2PQ14568 343 aaPredicted RBP9.22□□□□□ -0.93
PDGFRA-201ENST00000257290 ZBTB47Q9UFB7 747 aaPredicted RBP9.22□□□□□ -0.93
PDGFRA-201ENST00000257290 MYO15BQ96JP2 1530 aa9.2□□□□□ -0.94
PDGFRA-201ENST00000257290 KLHL34Q8N239 644 aa9.17□□□□□ -0.94
PDGFRA-201ENST00000257290 FKBP8Q14318 412 aa9.16□□□□□ -0.94
PDGFRA-201ENST00000257290 CANXP27824 592 aaKnown RBP9.16□□□□□ -0.94
PDGFRA-201ENST00000257290 AMER1Q5JTC6 1135 aaPredicted RBP9.16□□□□□ -0.94
PDGFRA-201ENST00000257290 TSHZ2Q9NRE2 1034 aa9.16□□□□□ -0.94
PDGFRA-201ENST00000257290 APPP05067 770 aa9.14□□□□□ -0.95
PDGFRA-201ENST00000257290 ANP32BQ92688 251 aaKnown RBP9.14□□□□□ -0.95
PDGFRA-201ENST00000257290 ATP1B4Q9UN42 357 aaPredicted RBP9.13□□□□□ -0.95
PDGFRA-201ENST00000257290 HMGB1P09429 215 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms