Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 KRT8P41-201ENST00000533985 1514 ntBASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLDN16Q9Y5I7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 B3GAT3P1-201ENST00000471720 806 ntBASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AP003071.4-201ENST00000562276 1284 ntBASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AL031985.4-201ENST00000642138 673 ntBASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN16Q9Y5I7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 AL355075.4-201ENST00000554988 638 ntBASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 MIR4785-201ENST00000585005 73 ntBASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 AC131212.4-201ENST00000623606 975 ntBASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CLDN16Q9Y5I7 RCC2P6-201ENST00000526625 1557 ntBASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN16Q9Y5I7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 AC130371.2-201ENST00000619443 611 ntBASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN16Q9Y5I7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN16Q9Y5I7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms