Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 AC110285.5-201ENST00000611501 352 ntBASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 AC005332.7-201ENST00000614046 2005 ntBASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4BQ9Y4P1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 GCSHP5-201ENST00000443090 522 ntBASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 RPPH1-201ENST00000516869 333 ntBASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.38■□□□□ 0.53
ATG4BQ9Y4P1 ZNF815P-204ENST00000434898 1737 ntBASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 KRT16P5-201ENST00000455284 522 ntBASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 AC142381.4-202ENST00000563973 229 ntBASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 AC066615.1-201ENST00000640911 628 ntBASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATG4BQ9Y4P1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4BQ9Y4P1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4BQ9Y4P1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms